GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   0.52 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   1.6  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.8 bits (49), Expect = 0.52
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 60  LIELGLSFDFEWGERAVLRVGKNYHRGPIP 89
           L    + F  E G   V ++G++Y   P+P
Sbjct: 601 LFHCHIEFHVEVGMALVFKIGEDYEMPPVP 630


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 3/36 (8%)

Query: 19 SRAKPESGGGQPPIRVASYAADSDHWPAFGGARPAP 54
          + ++ +SGG     +  S A   DH P FG   P P
Sbjct: 48 TESEEKSGGSYSSNKNVSRA---DHSPVFGKVEPVP 80


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,854
Number of Sequences: 317
Number of extensions: 1259
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 129
length of database: 114,650
effective HSP length: 50
effective length of query: 79
effective length of database: 98,800
effective search space:  7805200
effective search space used:  7805200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)