GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    31   0.057
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    30   0.13 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    25   2.8  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    24   6.5  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    24   6.5  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    24   8.6  

>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 31.1 bits (67), Expect = 0.057
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 43  HWPAFGGARPAPSSRLALIELGLSFDFEWGERAVLRVGKN 82
           H P F G       R+ LI+ GL   +  GERAVLR+ +N
Sbjct: 277 HTPQFHGIVSRCEGRILLIDTGLCSAYA-GERAVLRISQN 315


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 29.9 bits (64), Expect = 0.13
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 72  GERAVLRVGKNYHRGPIPSVIGIIQYTRGSSNYVV 106
           G+RAV+ +   YH GP+    GI  Y   S ++++
Sbjct: 151 GKRAVIAMHGGYHGGPLSFAHGISPYNMDSQDFIL 185


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 9/42 (21%), Positives = 22/42 (52%)

Query: 88  IPSVIGIIQYTRGSSNYVVVNLRAAPSHTRRSRPARRGVFAV 129
           +P+ IG+ ++    +N++  +L     +  R +P +  +F V
Sbjct: 165 VPTYIGVYKHMFSGNNHITKDLLVQQQNHNRQKPLQLAMFMV 206


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 81  KNYHRGPIPSVIGIIQYTRGSSNYVV 106
           KN+ RG IPSV+ +      SS+ ++
Sbjct: 679 KNFDRGTIPSVLAVSNGKGESSDAII 704


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 77  LRVGKNYHRGPIPSVIGIIQYTRGSSNYVVVN 108
           L++G   H GP+PS I +      S N  + N
Sbjct: 389 LKIGWGKHSGPLPSNIALAVAGGASRNIYIGN 420


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
          type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 14/64 (21%), Positives = 28/64 (43%)

Query: 4  ELSAKRKVDKCRDTHSRAKPESGGGQPPIRVASYAADSDHWPAFGGARPAPSSRLALIEL 63
          ++S +++V +  D   R K +    +P     +Y  +  +   F   R AP   +  +EL
Sbjct: 5  DVSRRQRVSRACDECHRRKIKCDQRRPCSNCIAYNYECTYGQPFKRLRHAPEKYIEFLEL 64

Query: 64 GLSF 67
           L +
Sbjct: 65 RLKY 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,671
Number of Sequences: 5004
Number of extensions: 22799
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 6
length of query: 129
length of database: 2,362,478
effective HSP length: 66
effective length of query: 63
effective length of database: 2,032,214
effective search space: 128029482
effective search space used: 128029482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)