GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)               29   1.6  
SB_26385| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)        27   4.9  
SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)                  26   8.6  
SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)                  26   8.6  

>SB_45528| Best HMM Match : TFR_dimer (HMM E-Value=6e-26)
          Length = 520

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/48 (29%), Positives = 21/48 (43%)

Query: 2   TKELSAKRKVDKCRDTHSRAKPESGGGQPPIRVASYAADSDHWPAFGG 49
           T + +   K D   DT  R +P  GG +P +      +D  H+  F G
Sbjct: 261 TAKTTDHSKTDTVYDTWKRLRPAPGGNKPILGTLGSGSDHAHFAYFVG 308


>SB_26385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 288

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 91  VIGIIQYTRGSSNYVVVNLRAAPSHTRRSRPARRG 125
           V+GI  + RGS NY ++ L+   S  RR R    G
Sbjct: 137 VVGIHDHERGSLNYTLLELQTFNSDVRRIRGYHSG 171


>SB_56781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 17/54 (31%), Positives = 23/54 (42%)

Query: 72  GERAVLRVGKNYHRGPIPSVIGIIQYTRGSSNYVVVNLRAAPSHTRRSRPARRG 125
           G R + R  + Y RG      G   +TRG+  Y     R    +TR +R   RG
Sbjct: 44  GTRGLTRGTRGYTRGTRGFTGGTRGFTRGTRGYTRGTRRYTGGYTRGTRGYTRG 97


>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1315

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 18  HSRAKP--ESGGGQPPIRVASYAADSDHWPAFGGARPAPSS 56
           +S  KP  ESGG   P   A+     +  P+ GG  PAP++
Sbjct: 244 NSSTKPGAESGGETTPAPGATTPPSEETTPSAGGTTPAPAT 284


>SB_23411| Best HMM Match : Glyco_transf_8 (HMM E-Value=8.4e-15)
          Length = 582

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 16  DTHSRAKPESGGGQPPIRVASYAADSDHWPAFGG 49
           DT     PE G    PI V   A +++++ AFGG
Sbjct: 400 DTEITIPPEQGALMNPIEVFKRAKETNNFLAFGG 433


>SB_35692| Best HMM Match : LicD (HMM E-Value=4.3e-08)
          Length = 549

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/57 (22%), Positives = 21/57 (36%)

Query: 31  PIRVASYAADSDHWPAFGGARPAPSSRLALIELGLSFDFEWGERAVLRVGKNYHRGP 87
           P++V +   +   W  +G  R  P   L      +    EW    ++  G NY   P
Sbjct: 192 PVKVRNGVFEDPLWSGYGTFRAFPLKELKFEGFQIPVIAEWERELLMLYGSNYMEIP 248


>SB_11809| Best HMM Match : Rabaptin (HMM E-Value=0.8)
          Length = 1009

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 6/48 (12%)

Query: 16  DTHSRAKPESGGGQPPIRVASYAADSDHWPAFGGARPAPSSRLALIEL 63
           D +  AK E  G QPPI +     D  HW       P  +S+L L++L
Sbjct: 226 DLNMPAK-EKYGAQPPIELLRQLLDHGHW-----YDPKDTSKLELLDL 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,595,119
Number of Sequences: 59808
Number of extensions: 181777
Number of successful extensions: 389
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 8
length of query: 129
length of database: 16,821,457
effective HSP length: 74
effective length of query: 55
effective length of database: 12,395,665
effective search space: 681761575
effective search space used: 681761575
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)