GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014135-88|AAN06496.1|  759|Drosophila melanogaster CG11533-PB,...    29   2.5  
AE014135-87|AAN06495.1|  915|Drosophila melanogaster CG11533-PC,...    29   2.5  
AE014135-86|AAF59340.2| 1014|Drosophila melanogaster CG11533-PA,...    29   2.5  

>AE014135-88|AAN06496.1|  759|Drosophila melanogaster CG11533-PB,
           isoform B protein.
          Length = 759

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 2   TKELSAKRKVDKCRDTHSRAKPESGGGQPPIR 33
           T  L+ K KVDK  +  S A+P  G G+P ++
Sbjct: 301 TDPLNIKEKVDKNCNATSLAQPAKGSGEPMVQ 332


>AE014135-87|AAN06495.1|  915|Drosophila melanogaster CG11533-PC,
           isoform C protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 2   TKELSAKRKVDKCRDTHSRAKPESGGGQPPIR 33
           T  L+ K KVDK  +  S A+P  G G+P ++
Sbjct: 457 TDPLNIKEKVDKNCNATSLAQPAKGSGEPMVQ 488


>AE014135-86|AAF59340.2| 1014|Drosophila melanogaster CG11533-PA,
           isoform A protein.
          Length = 1014

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 2   TKELSAKRKVDKCRDTHSRAKPESGGGQPPIR 33
           T  L+ K KVDK  +  S A+P  G G+P ++
Sbjct: 556 TDPLNIKEKVDKNCNATSLAQPAKGSGEPMVQ 587


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,980,087
Number of Sequences: 52641
Number of extensions: 301557
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 3
length of query: 129
length of database: 24,830,863
effective HSP length: 77
effective length of query: 52
effective length of database: 20,777,506
effective search space: 1080430312
effective search space used: 1080430312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)