GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like ...    27   5.5  
AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like ...    27   5.5  
AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical ...    26   7.3  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    26   9.6  

>AC024847-11|AAO21416.1|  453|Caenorhabditis elegans Ground-like
          (grd related) protein16, isoform b protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 21 AKPESGGGQPPIRVASYA--ADSDHWPAFGGARPAPSSRLALIELGLSFDFEWGERAVLR 78
          ++P  GGG PP   +SYA       + A     P P    A I  G  +   +G    + 
Sbjct: 31 SQPSCGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGGPGPVG 90

Query: 79 VGKNYHRGP 87
           G +Y +GP
Sbjct: 91 -GASYSQGP 98


>AC024847-10|AAF60859.1|  393|Caenorhabditis elegans Ground-like
          (grd related) protein16, isoform a protein.
          Length = 393

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 21 AKPESGGGQPPIRVASYA--ADSDHWPAFGGARPAPSSRLALIELGLSFDFEWGERAVLR 78
          ++P  GGG PP   +SYA       + A     P P    A I  G  +   +G    + 
Sbjct: 31 SQPSCGGGAPPCSSSSYATGGGGGSYAAAPALPPPPPPPPAPIGGGAGYAAPFGGPGPVG 90

Query: 79 VGKNYHRGP 87
           G +Y +GP
Sbjct: 91 -GASYSQGP 98


>AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical
           protein Y60A9.1 protein.
          Length = 268

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 2   TKELSAKRKVDKCRDTHSRAKPESGGGQPPIRVASYAADSDHWP 45
           ++ +S  R+ D+ R+   R++PE      P  +    + SD WP
Sbjct: 78  SRRISWSREADRVREISPRSEPEPIRRYDPPYLQKSQSFSDDWP 121


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 14/54 (25%), Positives = 22/54 (40%)

Query: 14  CRDTHSRAKPESGGGQPPIRVASYAADSDHWPAFGGARPAPSSRLALIELGLSF 67
           C+ T + +   S     P    S    + +WP  G  R  PS  + L E  ++F
Sbjct: 746 CKKTSTISSSSSKFSITPTPTPSSGTTTYNWPTGGTTRTLPSGEIILSESLIAF 799


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,281,547
Number of Sequences: 27539
Number of extensions: 134300
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 244
Number of HSP's gapped (non-prelim): 9
length of query: 129
length of database: 12,573,161
effective HSP length: 74
effective length of query: 55
effective length of database: 10,535,275
effective search space: 579440125
effective search space used: 579440125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)