GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
          receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 57 RLALIELGLSFDFEWGERAVLRVGKNYHRGPIPSVIG 93
          R +L  L +S   E  +R+  RV K    GPI  VIG
Sbjct: 40 RASLSNLDMSV-LECADRSAPRVKKTASAGPIFGVIG 75


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 1.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 57  RLALIELGLSFDFEWGERAVLRVGKNYHRGPIPSVIG 93
           R +L  L +S   E  +R+  RV K    GPI  VIG
Sbjct: 130 RASLSNLDMSV-LECADRSAPRVKKTASAGPIFGVIG 165


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,074
Number of Sequences: 429
Number of extensions: 1606
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 129
length of database: 140,377
effective HSP length: 51
effective length of query: 78
effective length of database: 118,498
effective search space:  9242844
effective search space used:  9242844
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)