GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001199-TA|BGIBMGA001199-PA|undefined
         (129 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C...    29   0.99 
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct...    27   4.0  
At2g17390.1 68415.m02008 ankyrin repeat family protein contains ...    27   4.0  
At1g74740.1 68414.m08660 calcium-dependent protein kinase, putat...    27   5.3  
At4g23350.1 68417.m03368 expressed protein predicted proteins, A...    26   9.3  
At2g26330.1 68415.m03159 leucine-rich repeat protein kinase, put...    26   9.3  
At2g18880.1 68415.m02203 fibronectin type III domain-containing ...    26   9.3  

>At2g20050.1 68415.m02343 protein phosphatase 2C, putative / PP2C,
          putative contains PF00481: Protein phosphatase 2C
          domain;
          Length = 514

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 10 KVDKCRDTHSRAKPESGGGQPPIRVASYAADSDHWPAFGGARPAPSS--RLALIELGLSF 67
          K +  R TH +A P  GG +     A+   D+   P F  +  A        + +LGLS 
Sbjct: 17 KENSIRQTHQQA-PSRGGTRATAAAAAVEEDN---PVFNFSSDAVDDVDNDEIHQLGLSR 72

Query: 68 DFEWGERAVLRVGKNY 83
          D EWG   + RV   +
Sbjct: 73 DQEWGITRLSRVSSQF 88


>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
           RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
           PIR2:A28490
          Length = 725

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 23  PESGGGQPPIRVASYAADSDHWPAFGGARP 52
           P    G PP+   SY     H P +G A P
Sbjct: 452 PSPAFGGPPLSQVSYGYGQSHGPEYGHAAP 481


>At2g17390.1 68415.m02008 ankyrin repeat family protein contains
          ankyrin repeats, Pfam:PF00023
          Length = 344

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 2  TKELSAKRKVDKCRDTHSRAKPESGGGQPP 31
          T  + +  K D   ++ S  KPESG G PP
Sbjct: 8  TPLIPSDEKNDTKEESKSTTKPESGSGAPP 37


>At1g74740.1 68414.m08660 calcium-dependent protein kinase, putative
           / CDPK, putative similar to calcium-dependent protein
           kinase [Arabidopsis thaliana] gi|604880|dbj|BAA04829;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 541

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 50  ARPAPSSRLALIELGLSFDFEWGERAVLRVGKNYHRGP 87
           A    +S L  I+ GLS  F+ GER    VG  Y+  P
Sbjct: 192 ANKKENSALKAIDFGLSVLFKPGERFTEIVGSPYYMAP 229


>At4g23350.1 68417.m03368 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function
          Length = 386

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 25  SGGGQ--PPIRVASYAADSDHWPAFGGARPAPSSRLALIE 62
           S GGQ   PIR  S    S HWP+ G  + A  S L L +
Sbjct: 298 SWGGQVYSPIREKSPPMGSGHWPSEGFHKAAFISGLKLFD 337


>At2g26330.1 68415.m03159 leucine-rich repeat protein kinase,
           putative (ERECTA) identical to uncharacterized receptor
           protein kinase ERECTA [Arabidopsis thaliana]
           gi|1389566|dbj|BAA11869; contains Pfam domains PF00560:
           Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 976

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 65  LSFDFEWGERAVLRVGKNYHRGPIPSVIGIIQ 96
           + FD  + + A L +  N   G IPSVIG++Q
Sbjct: 252 IPFDIGFLQVATLSLQGNQLSGKIPSVIGLMQ 283


>At2g18880.1 68415.m02203 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 417

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 3   KELSAKRKVDKCRDTHSRAKPESGGG 28
           KE  AK+ +D   D  +R  PE GGG
Sbjct: 379 KEALAKQLIDTFSDCITRKHPEIGGG 404


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.134    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,444
Number of Sequences: 28952
Number of extensions: 134778
Number of successful extensions: 309
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 8
length of query: 129
length of database: 12,070,560
effective HSP length: 73
effective length of query: 56
effective length of database: 9,957,064
effective search space: 557595584
effective search space used: 557595584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)