Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001198-TA|BGIBMGA001198-PA|IPR006671|Cyclin, N-terminal,
IPR004367|Cyclin, C-terminal, IPR006670|Cyclin, IPR011028|Cyclin-like
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 61 2e-10
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb... 57 3e-09
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|... 53 5e-08
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p... 49 9e-07
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 41 2e-04
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||... 39 0.001
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 29 0.76
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 28 1.8
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 4.1
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 25 9.4
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 60.9 bits (141), Expect = 2e-10
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
MR+++ W++ LAV+ +DRFL++R+ S + QL +T +L+ASK+ +
Sbjct: 168 MREILNEWLVEIHSNFCLMPETLYLAVNIIDRFLSRRSCSLSKFQLTGITALLIASKYEE 227
Query: 118 CHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNS 177
S+ TD + +V E +L LN+ LS + +F+ + ++
Sbjct: 228 VMCPSIQNFVYMTDGAFTVEDVCVAERYMLNVLNFDLSYPSPLNFLRKISQAEGY---DA 284
Query: 178 LIRTHALTLTSVCYTETEFLLVPPSMVAVACITAAARGLR 217
RT LT + + + L P S +A A + + R LR
Sbjct: 285 QTRTLGKYLTEIYLFDHDLLRYPMSKIAAAAMYLSRRLLR 324
>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 415
Score = 56.8 bits (131), Expect = 3e-09
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 24 DRDPRVLLNLLALERSHALHTDYFQNVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLA 83
D DP + + +LER A +Y +VQ +I R ++ W++ LA
Sbjct: 162 DYDPEIFHYMQSLERKLAPPPNYM-SVQQEIDWVTRHMLVDWIVQVQIHFRLLPETLFLA 220
Query: 84 VSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWE 143
V+ +DRFL+ + +S Q++QL+ ++ +L+A K+ + HP S+ E+ + E
Sbjct: 221 VNLIDRFLSIKVVSLQKVQLVGLSALLIACKYEEIHPPSIYNFAHVVQGIFTVDEIIRAE 280
Query: 144 IMLLQRLNWQLS 155
+L L++ +S
Sbjct: 281 RYMLMLLDFDIS 292
>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
2|||Manual
Length = 482
Score = 52.8 bits (121), Expect = 5e-08
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
MR ++T W++ LAV+ +DRFL+ R S +LQL+ + + +ASK+ +
Sbjct: 235 MRGILTDWLIEVHSRFRLLPETLFLAVNIIDRFLSLRVCSLNKLQLVGIAALFIASKYEE 294
Query: 118 CHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNS 177
SV D E+ Q E +L+ L + L+ +F+ +++ + +
Sbjct: 295 VMCPSVQNFVYMADGGYDEEEILQAERYILRVLEFNLAYPNPMNFLRR-ISKADF--YDI 351
Query: 178 LIRTHALTLTSVCYTETEFLLVPPSMVAVACITAA 212
RT A L + + + L PPS A + A
Sbjct: 352 QTRTVAKYLVEIGLLDHKLLPYPPSQQCAAAMYLA 386
>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 359
Score = 48.8 bits (111), Expect = 9e-07
Identities = 31/139 (22%), Positives = 71/139 (51%), Gaps = 7/139 (5%)
Query: 29 VLLNLLALERSHALHTDYFQNVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMD 88
++ +L+ E++ L+ + N Q +++ MR + +++ PL++S MD
Sbjct: 100 IIHHLITREKNFLLNV-HLSNQQPELRWSMRPALVNFIVEIHNGFDLSIDTLPLSISLMD 158
Query: 89 RFLAQRAISRQQLQLLAVTTMLLASKFRQCH---PLSVDLLCAYTDNSVYPHEV-RQWEI 144
++++R + + +QL+A + +ASKF + PL +L A ++Y ++ + E
Sbjct: 159 SYVSRRVVYCKHIQLVACVCLWIASKFHETEDRVPLLQELKLAC--KNIYAEDLFIRMER 216
Query: 145 MLLQRLNWQLSVATAFDFV 163
+L L+W +S+ T ++
Sbjct: 217 HILDTLDWDISIPTPASYI 235
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/151 (20%), Positives = 57/151 (37%), Gaps = 3/151 (1%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
MR V W++ L+++ +DRFL+ + + +++L T + +A K+ +
Sbjct: 174 MRASVINWIVGVHTCINLLPESLFLSINVLDRFLSLQNVPASKMKLCGATALFIACKYEE 233
Query: 118 CHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNS 177
HP +V L + ++ E +L L +QL F+ W S
Sbjct: 234 IHPPTVKDLEIVLEGEWIGEDICGMEKYMLMVLQYQLGWPGPVSFLRLLTIVNKW---ES 290
Query: 178 LIRTHALTLTSVCYTETEFLLVPPSMVAVAC 208
+R V E F + S + C
Sbjct: 291 QLRIMIKYFLEVSLVEQRFSSLRASQLVATC 321
>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 322
Score = 38.7 bits (86), Expect = 0.001
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 83 AVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQW 142
A+ + RF ++ ++++ T++ LA+K H +S++ C + P EV ++
Sbjct: 94 AILFFKRFYLINSVMEYSPKIISFTSLFLATKCND-HYISIEQFCKNMPKTT-PEEVLEY 151
Query: 143 EIMLLQRLNWQLSVATAFDFVEPFL 167
E + Q L W L V F ++ FL
Sbjct: 152 EFNVCQSLKWDLYVWLPFRPLQGFL 176
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 229 TRTPAAAAELVARHVERVLARETQPQEPRTRV-SQAHKQTTPEHTELPDTPTDVQDV 284
T PAAA E + + E ++++ET Q P T ++ H++TT E + DV
Sbjct: 88 TSAPAAAVE-IEKENESIISKETS-QAPETSTGAEEHQETTEESKQSVSNEVSSPDV 142
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 204 VAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVL 247
+ ACI A R +V + E+C LT P V + ++R+L
Sbjct: 163 IIAACIYIACRQGKVPRTFMEICTLTNVPKKEIGRVYKTLQRML 206
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 14 LCVAGSDRALDRDPRVLLNLLALERSHALHTDYFQNVQIDIQPFMRK 60
+C G + +L V L++ + +HA+H +Y + PF+ K
Sbjct: 314 ICELGKESSLFSISMVKSFLVSADMAHAMHPNYSSRYENSNTPFLNK 360
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 206 VACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVLARETQPQEPRTRVSQAHK 265
+A +T+ G + NE AL + + E+ H E+ + R T E ++RV +
Sbjct: 496 LAVLTSGFTGADIMNVCNE-GALIAARSNSNEVQMVHFEQAIERVTAGLEKKSRVLSPEE 554
Query: 266 QTTPEHTE 273
+ T H E
Sbjct: 555 KNTVAHHE 562
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.324 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,707
Number of Sequences: 5004
Number of extensions: 39012
Number of successful extensions: 139
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 11
length of query: 286
length of database: 2,362,478
effective HSP length: 72
effective length of query: 214
effective length of database: 2,002,190
effective search space: 428468660
effective search space used: 428468660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)
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