Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001198-TA|BGIBMGA001198-PA|IPR006671|Cyclin, N-terminal,
IPR004367|Cyclin, C-terminal, IPR006670|Cyclin, IPR011028|Cyclin-like
(286 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 4e-26
SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0) 75 9e-14
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) 74 2e-13
SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 3e-13
SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23) 34 0.15
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07) 32 0.62
SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 30 1.9
SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_22349| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_10978| Best HMM Match : Cyclin_N (HMM E-Value=2.7e-06) 29 3.3
SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
>SB_38228| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 404
Score = 115 bits (277), Expect = 4e-26
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
MRK+V TWML F L+++Y+DR L+ + + QLQLL M +ASK ++
Sbjct: 1 MRKLVATWMLEVCEEERCEEEVFALSMNYLDRILSLLPVKKFQLQLLGAVCMFIASKMKE 60
Query: 118 CHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSN- 176
PL+ + LC YTDNS+ E+ WE+++L +L W +S T DF++ +R+P RS
Sbjct: 61 TSPLTAEKLCIYTDNSITTEELLDWELLVLGKLKWDVSAVTPHDFLDQIFSRLPLDRSTL 120
Query: 177 SLIRTHALTLTSVCYTETEFLLV 199
++R HA T ++C T + F +
Sbjct: 121 DVLRKHASTFIALCCTASAFAFI 143
>SB_25383| Best HMM Match : Cyclin_N (HMM E-Value=0)
Length = 561
Score = 74.5 bits (175), Expect = 9e-14
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 4/182 (2%)
Query: 33 LLALERSHALHTDYFQNVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLA 92
L A+E +++ Y N Q ++ MR ++ W++ + +S +DRFLA
Sbjct: 153 LRAMEEHYSVSPTYMNNQQ-EVNEKMRAILLDWLVQVHLKFRLLQETLYITMSIIDRFLA 211
Query: 93 QRAISRQQLQLLAVTTMLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNW 152
+S+++LQL+ V MLLASK+ + + TD++ ++RQ E ++ ++L++
Sbjct: 212 VHQVSKRELQLVGVGAMLLASKYEEMFAPEIGDFVYITDHAYTKKQIRQMESLIFRKLDF 271
Query: 153 QLSVATAFDFVEPFLARVPWGRSNSLIRTHALTLTSVCYTETEFLLVPPSMVAVACITAA 212
L F+ G + + + LT + Y +FL PS +A A ++ A
Sbjct: 272 SLGKPLCLHFLRRNSKAGAVGAEEHTMAKYLMELTLIDYQSIKFL---PSEIAAASLSLA 328
Query: 213 AR 214
R
Sbjct: 329 MR 330
>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
Length = 279
Score = 73.7 bits (173), Expect = 2e-13
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 14/186 (7%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
+R+ + W+ LA+ YMD F+ + I QL LLA+T +LLA+KF +
Sbjct: 60 IRRYLVDWLAVIGEKLGSSHGVVHLAIYYMDFFMDKFIIQESQLHLLALTALLLAAKFDE 119
Query: 118 CHPLSVDL--LCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLAR------ 169
D+ L + +N+ E Q E++LL+ NW + + T F+E +LA+
Sbjct: 120 NENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNIDLPTPVQFLEYYLAKATIDYK 179
Query: 170 -----VPWGRSNSLIRTHALTLTSVCYTETEFLLVPPSMVAVACITAAARGLRVRMS-VN 223
+ + ++++ +R + + + + FL PS++ +CI A+ L + S N
Sbjct: 180 ESEMTIDYKKTSTYLRKYVYYFLEISFQDHTFLSFSPSLITSSCIAASRICLNLIPSWTN 239
Query: 224 ELCALT 229
EL +T
Sbjct: 240 ELSKVT 245
>SB_33964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 416
Score = 72.9 bits (171), Expect = 3e-13
Identities = 39/121 (32%), Positives = 64/121 (52%)
Query: 47 FQNVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAV 106
+ Q DI MR ++ W++ L V+Y+DRFL+ ++ R +LQL+
Sbjct: 212 YMRKQPDINNSMRAILVDWLVEVAEEYKLLPQTLYLTVNYIDRFLSAMSVLRGKLQLVGT 271
Query: 107 TTMLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPF 166
MLLASKF + +P V TD++ +V + E ++L+ L + LSV T +F+E F
Sbjct: 272 ACMLLASKFEEIYPPEVSEFVYITDDTYTAKQVLKMEQLVLKVLTFDLSVPTILNFLERF 331
Query: 167 L 167
+
Sbjct: 332 I 332
>SB_16479| Best HMM Match : Cyclin_N (HMM E-Value=5.9e-23)
Length = 392
Score = 33.9 bits (74), Expect = 0.15
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 1 MENSGNINERAGDLCVAGSD--RALDRDPRVLLNLLALERSHALHTDYFQNVQIDIQPFM 58
+ENS ++ D+ +D + + + LN+ E L + + Q ++ M
Sbjct: 152 VENSSHLPPDVVDIDADKTDPFQVAEYAEEIFLNMKRRENLFPL--ELYMEKQKELTISM 209
Query: 59 RKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASK 114
R ++ W++ L V +D +L + + R+ LQL+ ++ +A K
Sbjct: 210 RAILVDWLVEVQESFELYHETLYLGVRVLDNYLMRSYVERENLQLVGAVSLYIACK 265
>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
Length = 282
Score = 31.9 bits (69), Expect = 0.62
Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 25/220 (11%)
Query: 83 AVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVDLLCAYTDNSV-----YPH 137
A + RF ++ ++ L+A T + LASK +C +S + L + + V Y
Sbjct: 65 ATVFFKRFYSKNSLKSIDPLLIAPTCVYLASKVEECGAISNNKLISACSSVVKNKYSYAF 124
Query: 138 EVRQWEIMLLQRLNWQLSVATAFD----FVEPFLARVPW----GRSNSLIRTHALTLTSV 189
++ Q+ + Q L + + D P+ + G +++ T +
Sbjct: 125 QMEQFPYRMNQVLECEFYLLEMLDCCLIIYHPYRPLTQYVSDLGMEEAILPTAWRIINDS 184
Query: 190 CYTETEFLLVPPSMVAVACITAA-------ARGLRVRMSV--NELCALTRTPAAAAELVA 240
T+ FL+ PP ++A+A I A ++ +SV +++ +T E+
Sbjct: 185 LRTDI-FLIYPPYLIALAAIHMACVIQQKDSKQWFAELSVDMDQIVEITHHILRLYEIWK 243
Query: 241 RHVERVLARETQPQEPRTRVSQAHKQTTPEHTELPDTPTD 280
E+ R + P+ +V + TTP HT P T D
Sbjct: 244 NFEEKQEIRGILNKAPKPKVRPS--STTPGHTPSPITTVD 281
>SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 357
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 83 AVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHP 120
A + RF +R R+ +Q + + M+L K ++CHP
Sbjct: 136 ATQLLQRFYGRRQRERESIQDFSHSLMVLMDKIQKCHP 173
>SB_49130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 30.3 bits (65), Expect = 1.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 83 AVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHP 120
A + RF +R R+ +Q + + M+L K ++CHP
Sbjct: 136 ATQLLQRFYGRRQRERESIQDFSHSLMVLMDKIQKCHP 173
>SB_22349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 29.5 bits (63), Expect = 3.3
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 83 AVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVD----LLCAYTDNSVYPHE 138
A++Y+ RF + ++ + + + + +A K + + +SV+ +L V
Sbjct: 15 AITYLKRFYVKTSVMDHPPKEMFLVCLFMACKVEE-YNISVENFVQILPRDRREKVMDF- 72
Query: 139 VRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNSLIRTHALTLTSVCY------T 192
+ E++L++RL++ L++ F +E FL + S + + + + + T
Sbjct: 73 ILAHELLLMERLDFHLTIHHPFRPMEGFLIDIKMYLSEGKVNPESWRIKAEEFLLRAMRT 132
Query: 193 ETEFLLVPPSMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERV 246
+ F PS +A+A ++ + G ++ VNE +T A + + V V
Sbjct: 133 DVAFHF-SPSQIALAALSVGSTGGELQKYVNEKFGVTDKGTALMDTINSIVNMV 185
>SB_10978| Best HMM Match : Cyclin_N (HMM E-Value=2.7e-06)
Length = 283
Score = 29.5 bits (63), Expect = 3.3
Identities = 34/174 (19%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 83 AVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVD----LLCAYTDNSVYPHE 138
A++Y+ RF + ++ + + + + +A K + + +SV+ +L V
Sbjct: 82 AITYLKRFYVKTSVMDHPPKEMFLVCLFMACKVEE-YNISVENFVQILPRDRREKVMDF- 139
Query: 139 VRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNSLIRTHALTLTSVCY------T 192
+ E++L++RL++ L++ F +E FL + S + + + + + T
Sbjct: 140 ILAHELLLMERLDFHLTIHHPFRPMEGFLIDIKMYLSEGKVNPESWRIKAEEFLLRAMRT 199
Query: 193 ETEFLLVPPSMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERV 246
+ F PS +A+A ++ + G ++ VNE +T A + + V V
Sbjct: 200 DVAFHF-SPSQIALAALSVGSTGGELQKYVNEKFGVTDKGTALMDTINSIVNMV 252
>SB_24709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 29.1 bits (62), Expect = 4.4
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 193 ETEFLLVPPSMVAVACITAAARGLRVRMSVNELCA-LTRTPAAAAELVARHVERVLARET 251
E+ F S++ VA + + GL R EL A LTRTPA H T
Sbjct: 261 ESNFAWSASSVIGVAGLLVSLIGLYTRRQ--ELAAALTRTPAVNQRATDPHATEGADGVT 318
Query: 252 QPQEPRTRVSQAHKQTTPEHTELPD 276
P P +Q QT LPD
Sbjct: 319 PPTRPPLAATQ---QTKDRRFALPD 340
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/29 (51%), Positives = 16/29 (55%)
Query: 251 TQPQEPRTRVSQAHKQTTPEHTELPDTPT 279
TQP R S A +QTTP HT P PT
Sbjct: 116 TQPPAYPPRQSYALQQTTPLHTSQPLRPT 144
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,566,197
Number of Sequences: 59808
Number of extensions: 300264
Number of successful extensions: 1129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1116
Number of HSP's gapped (non-prelim): 13
length of query: 286
length of database: 16,821,457
effective HSP length: 81
effective length of query: 205
effective length of database: 11,977,009
effective search space: 2455286845
effective search space used: 2455286845
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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