Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001198-TA|BGIBMGA001198-PA|IPR006671|Cyclin, N-terminal,
IPR004367|Cyclin, C-terminal, IPR006670|Cyclin, IPR011028|Cyclin-like
(286 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical ... 94 9e-20
AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D prot... 93 2e-19
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 57 1e-08
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 57 1e-08
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 57 1e-08
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 57 1e-08
Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical pr... 57 2e-08
U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein. 57 2e-08
Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical pr... 52 4e-07
U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein. 52 4e-07
AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical ... 50 2e-06
AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b prot... 48 1e-05
U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical p... 36 0.025
U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical pr... 36 0.025
U00055-10|AAN65306.1| 181|Caenorhabditis elegans Hypothetical p... 36 0.033
U00055-8|AAL06043.1| 311|Caenorhabditis elegans Hypothetical pr... 36 0.033
AF026213-1|AAB71309.1| 130|Caenorhabditis elegans Hypothetical ... 36 0.033
AC006648-6|AAP68938.1| 123|Caenorhabditis elegans Cyclin a prot... 34 0.10
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 29 2.9
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 29 2.9
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 28 6.6
>AL032639-6|CAA21630.1| 405|Caenorhabditis elegans Hypothetical
protein Y38F1A.5 protein.
Length = 405
Score = 94.3 bits (224), Expect = 9e-20
Identities = 48/168 (28%), Positives = 82/168 (48%)
Query: 4 SGNINERAGDLCVAGSDRALDRDPRVLLNLLALERSHALHTDYFQNVQIDIQPFMRKVVT 63
S +N+ L +D + D R N + E + + YF VQ +I PF R+
Sbjct: 50 SAALNDNVRTLIYNRTDPHIQLDMRAFYNCMEYEEALQPNYHYFTGVQENITPFHREQAI 109
Query: 64 TWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSV 123
W+ F LAVS +DRF++ + I + +Q++A + +ASK + HP++
Sbjct: 110 DWIYDVAKEENCDGDVFLLAVSLIDRFMSVQNILKHDIQMIAGVALFIASKLKAPHPMTA 169
Query: 124 DLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVP 171
+ Y+DNS + QWE++++ L W+ TAF F + +R+P
Sbjct: 170 SKIAYYSDNSCPIDMILQWELLIVTTLQWETESPTAFSFFDFLASRIP 217
>AF053067-1|AAC35273.1| 405|Caenorhabditis elegans cyclin D
protein.
Length = 405
Score = 93.5 bits (222), Expect = 2e-19
Identities = 48/168 (28%), Positives = 81/168 (48%)
Query: 4 SGNINERAGDLCVAGSDRALDRDPRVLLNLLALERSHALHTDYFQNVQIDIQPFMRKVVT 63
S +N+ L +D + D R N + E + + YF VQ +I PF R+
Sbjct: 50 SAALNDNVRTLIYNRTDPHIQLDMRAFYNCMEYEEALQPNYHYFTGVQENITPFHREQAI 109
Query: 64 TWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSV 123
W+ F LAVS +DRF++ + I + +Q++A + +ASK + HP++
Sbjct: 110 DWIYDVAKEENCDGDVFLLAVSLIDRFMSVQNILKHDIQMIAGVALFIASKLKAPHPMTA 169
Query: 124 DLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVP 171
+ Y+DNS + QWE++++ L W+ TAF F +R+P
Sbjct: 170 SKIAYYSDNSCPIDMILQWELLIVTTLQWETESPTAFSFFNFLASRIP 217
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 53 DIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAI--SRQQLQLLAVTTML 110
D+ R+++ WM+ F LAV Y+DR+L + S QL+ +
Sbjct: 253 DMDDEKRRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALF 312
Query: 111 LASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARV 170
+A+K+ + +P TD++ +R E+++++ + W L T+ ++ +L +
Sbjct: 313 IAAKYEEIYPPKCIDFAHLTDSAFTCDNIRTMEVLIVKYIGWSLGPITSIQWLSTYLQLL 372
Query: 171 PWGRSN 176
G+ N
Sbjct: 373 GTGKKN 378
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 53 DIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAI--SRQQLQLLAVTTML 110
D+ R+++ WM+ F LAV Y+DR+L + S QL+ +
Sbjct: 256 DMDDEKRRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALF 315
Query: 111 LASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARV 170
+A+K+ + +P TD++ +R E+++++ + W L T+ ++ +L +
Sbjct: 316 IAAKYEEIYPPKCIDFAHLTDSAFTCDNIRTMEVLIVKYIGWSLGPITSIQWLSTYLQLL 375
Query: 171 PWGRSN 176
G+ N
Sbjct: 376 GTGKKN 381
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 53 DIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAI--SRQQLQLLAVTTML 110
D+ R+++ WM+ F LAV Y+DR+L + S QL+ +
Sbjct: 256 DMDDEKRRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALF 315
Query: 111 LASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARV 170
+A+K+ + +P TD++ +R E+++++ + W L T+ ++ +L +
Sbjct: 316 IAAKYEEIYPPKCIDFAHLTDSAFTCDNIRTMEVLIVKYIGWSLGPITSIQWLSTYLQLL 375
Query: 171 PWGRSN 176
G+ N
Sbjct: 376 GTGKKN 381
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Query: 53 DIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAI--SRQQLQLLAVTTML 110
D+ R+++ WM+ F LAV Y+DR+L + S QL+ +
Sbjct: 256 DMDDEKRRILIDWMMEVCESEKLHRETFHLAVDYVDRYLESSNVECSTDNFQLVGTAALF 315
Query: 111 LASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARV 170
+A+K+ + +P TD++ +R E+++++ + W L T+ ++ +L +
Sbjct: 316 IAAKYEEIYPPKCIDFAHLTDSAFTCDNIRTMEVLIVKYIGWSLGPITSIQWLSTYLQLL 375
Query: 171 PWGRSN 176
G+ N
Sbjct: 376 GTGKKN 381
>Z29116-3|CAA82372.1| 485|Caenorhabditis elegans Hypothetical
protein ZK507.6 protein.
Length = 485
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 49 NVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTT 108
++Q + MR ++ W F LAVS +DR L+ I + + QL+ T+
Sbjct: 235 DIQSQVNEEMRTILIDWFSDVVKEYNFQKETFHLAVSLVDRALSMFNIDKMRFQLVGTTS 294
Query: 109 MLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLA 168
M++A K+ + P ++ TDN+ ++ E LL + ++ +++ T+ F F
Sbjct: 295 MMIAVKYEEIFPPEIEDFALITDNTYRVPDILLMERFLLGKFDFVVAMPTSSWFGTCFAK 354
Query: 169 RVPWGRSNSLIRTHALTLTSVCYTETEFLLVPPSMVAVA 207
R+ + + +R L + + FL PS +A A
Sbjct: 355 RMNFTKK---MRNTVHYLLELSLIDVHFLRYRPSDIAAA 390
>U20902-1|AAA84393.1| 485|Caenorhabditis elegans cyclin A protein.
Length = 485
Score = 56.8 bits (131), Expect = 2e-08
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 3/159 (1%)
Query: 49 NVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTT 108
++Q + MR ++ W F LAVS +DR L+ I + + QL+ T+
Sbjct: 235 DIQSQVNEEMRTILIDWFSDVVKEYNFQKETFHLAVSLVDRALSMFNIDKMRFQLVGTTS 294
Query: 109 MLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLA 168
M++A K+ + P ++ TDN+ ++ E LL + ++ +++ T+ F F
Sbjct: 295 MMIAVKYEEIFPPEIEDFALITDNTYRVPDILLMERFLLGKFDFVVAMPTSSWFGTCFAK 354
Query: 169 RVPWGRSNSLIRTHALTLTSVCYTETEFLLVPPSMVAVA 207
R+ + + +R L + + FL PS +A A
Sbjct: 355 RMNFTKK---MRNTVHYLLELSLIDVHFLRYRPSDIAAA 390
>Z70312-5|CAA94384.1| 361|Caenorhabditis elegans Hypothetical
protein ZC168.4 protein.
Length = 361
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/108 (25%), Positives = 52/108 (48%)
Query: 56 PFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKF 115
P MR+++ W++ L V +DR L ++ S+ LQLL ++ M +ASKF
Sbjct: 107 PKMRRILVDWLVQVHVRFHLTPETLHLTVFILDRMLQKKVTSKADLQLLGISAMFVASKF 166
Query: 116 RQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFV 163
+ + + T+N+ ++ E +L LN+ LS ++ F+
Sbjct: 167 EEVYLPDIHDYEFITENTYSKKQILAMEQTILNSLNFDLSCPSSLVFL 214
>U20903-1|AAA84394.1| 361|Caenorhabditis elegans cyclin B protein.
Length = 361
Score = 52.4 bits (120), Expect = 4e-07
Identities = 28/108 (25%), Positives = 52/108 (48%)
Query: 56 PFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKF 115
P MR+++ W++ L V +DR L ++ S+ LQLL ++ M +ASKF
Sbjct: 107 PKMRRILVDWLVQVHVRFHLTPETLHLTVFILDRMLQKKVTSKADLQLLGISAMFVASKF 166
Query: 116 RQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFV 163
+ + + T+N+ ++ E +L LN+ LS ++ F+
Sbjct: 167 EEVYLPDIHDYEFITENTYSKKQILAMEQTILNSLNFDLSCPSSLVFL 214
>AL021176-1|CAA15975.2| 317|Caenorhabditis elegans Hypothetical
protein Y43E12A.1 protein.
Length = 317
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 37 ERSHALHTDYFQNVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAI 96
E+ + L + ++ + MR+++ W++ L + +DR + + +
Sbjct: 43 EKKYVLDDSFINGGNVNSK--MRRILVDWLIQVHLRFHLTPETLHLTIFVLDRIIVKNIV 100
Query: 97 SRQQLQLLAVTTMLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSV 156
S+ + QLL V + +ASKF + + TDN+ ++ E +L LN+ LS
Sbjct: 101 SKAEFQLLGVAALFVASKFEDIYLPDILEYEMITDNTFSKKQIMAMEQTILNALNFDLSC 160
Query: 157 ATAFDFV 163
++ F+
Sbjct: 161 PSSLVFL 167
>AC006666-1|AAK21417.1| 339|Caenorhabditis elegans Cyclin b protein
2.2 protein.
Length = 339
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/127 (20%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 37 ERSHALHTDYFQNVQIDIQPFMRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAI 96
E+ + L + ++ + MR+++ W++ L + +DR + + +
Sbjct: 65 EKKYVLDDSFINGGNVNSK--MRRILVDWLVQVHLRFHLTPETLHLTIFVLDRIIVKNIV 122
Query: 97 SRQQLQLLAVTTMLLASKFRQCHPLSVDLLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSV 156
S+ + QLL V + +ASKF + + T+N+ ++ E +L LN+ LS
Sbjct: 123 SKAEFQLLGVAALFVASKFEDIYLPDILEYELITENTFSKKQILAMEQTILNALNFDLSC 182
Query: 157 ATAFDFV 163
++ F+
Sbjct: 183 PSSLVFL 189
>U00055-11|AAN65307.1| 290|Caenorhabditis elegans Hypothetical
protein R02F2.1d protein.
Length = 290
Score = 36.3 bits (80), Expect = 0.025
Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 1/189 (0%)
Query: 65 WMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVD 124
WM LAVS DR + I + + +AV ++ +A K + H
Sbjct: 47 WMCAAAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAP 106
Query: 125 LLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNSLIRTHAL 184
+ E+++ EI +L+ L W + FVE L+ + I+ H
Sbjct: 107 VFLGRLRLEYSAQELKRMEIKILEVLRWDAHLPNLNRFVECLLSELDAAFLLPSIKKHLD 166
Query: 185 TLTSVCYTETEFLLVPPSMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVE 244
L + F ++ V+ + A + +N L L + P + V
Sbjct: 167 FLLCDSTLTSNFRWSVLALSTVSLLVEAT-NKHWQYPINALARLCKIPMSEVNRCRVKVS 225
Query: 245 RVLARETQP 253
+ +R P
Sbjct: 226 NLWSRHVLP 234
>U00055-9|AAL06042.1| 309|Caenorhabditis elegans Hypothetical
protein R02F2.1a protein.
Length = 309
Score = 36.3 bits (80), Expect = 0.025
Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 1/189 (0%)
Query: 65 WMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVD 124
WM LAVS DR + I + + +AV ++ +A K + H
Sbjct: 66 WMCAAAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAP 125
Query: 125 LLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARVPWGRSNSLIRTHAL 184
+ E+++ EI +L+ L W + FVE L+ + I+ H
Sbjct: 126 VFLGRLRLEYSAQELKRMEIKILEVLRWDAHLPNLNRFVECLLSELDAAFLLPSIKKHLD 185
Query: 185 TLTSVCYTETEFLLVPPSMVAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVE 244
L + F ++ V+ + A + +N L L + P + V
Sbjct: 186 FLLCDSTLTSNFRWSVLALSTVSLLVEAT-NKHWQYPINALARLCKIPMSEVNRCRVKVS 244
Query: 245 RVLARETQP 253
+ +R P
Sbjct: 245 NLWSRHVLP 253
>U00055-10|AAN65306.1| 181|Caenorhabditis elegans Hypothetical
protein R02F2.1c protein.
Length = 181
Score = 35.9 bits (79), Expect = 0.033
Identities = 24/106 (22%), Positives = 41/106 (38%)
Query: 65 WMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVD 124
WM LAVS DR + I + + +AV ++ +A K + H
Sbjct: 66 WMCAAAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAP 125
Query: 125 LLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARV 170
+ E+++ EI +L+ L W + FVE L+ +
Sbjct: 126 VFLGRLRLEYSAQELKRMEIKILEVLRWDAHLPNLNRFVECLLSEL 171
>U00055-8|AAL06043.1| 311|Caenorhabditis elegans Hypothetical
protein R02F2.1b protein.
Length = 311
Score = 35.9 bits (79), Expect = 0.033
Identities = 24/106 (22%), Positives = 41/106 (38%)
Query: 65 WMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQCHPLSVD 124
WM LAVS DR + I + + +AV ++ +A K + H
Sbjct: 66 WMCAAAKRIGLEMDAASLAVSIFDRVVTSVKIPGKYVNCVAVGSLSIAKKLCEDHEEDAP 125
Query: 125 LLCAYTDNSVYPHEVRQWEIMLLQRLNWQLSVATAFDFVEPFLARV 170
+ E+++ EI +L+ L W + FVE L+ +
Sbjct: 126 VFLGRLRLEYSAQELKRMEIKILEVLRWDAHLPNLNRFVECLLSEL 171
>AF026213-1|AAB71309.1| 130|Caenorhabditis elegans Hypothetical
protein F08F1.9 protein.
Length = 130
Score = 35.9 bits (79), Expect = 0.033
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
MR ++ W LAVS +DR L I++ + QL+ +T+M +A K+ +
Sbjct: 1 MRTILIDWFSDAVREYIFRNEAVHLAVSLVDRALPMFNINKMRFQLVGITSMRIAVKYEE 60
Query: 118 CHP 120
P
Sbjct: 61 IFP 63
>AC006648-6|AAP68938.1| 123|Caenorhabditis elegans Cyclin a protein
2 protein.
Length = 123
Score = 34.3 bits (75), Expect = 0.10
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 58 MRKVVTTWMLXXXXXXXXXXXXFPLAVSYMDRFLAQRAISRQQLQLLAVTTMLLASKFRQ 117
MR ++ W LA S +DR L I + + QL+ +T+M +A K+ +
Sbjct: 1 MRTILIDWFSDAVREYISRKEAVHLAASLVDRALPMFNIDKMRFQLVGITSMRIAVKYEE 60
Query: 118 CHP 120
P
Sbjct: 61 IFP 63
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 146 LLQRLNWQLSVATAFDFVEPFLARVPWGRSNSLIRTHALTLTSVCYTETEF--LLVPPSM 203
L+ + LS + D + P + + S L+ L S+CY F L +PP +
Sbjct: 715 LMPVITRSLSQSALEDLINPMIELIQCETSVKLLDRRFLMHVSICYGTHTFLDLFLPPIV 774
Query: 204 VAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVLA 248
A A + R + + S+ L A P A+ ++ +V R++A
Sbjct: 775 EACASMN-CDRSVVAKESIMWL-AKRYGPVICAKFISSNVLRIMA 817
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 29.5 bits (63), Expect = 2.9
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 146 LLQRLNWQLSVATAFDFVEPFLARVPWGRSNSLIRTHALTLTSVCYTETEF--LLVPPSM 203
L+ + LS + D + P + + S L+ L S+CY F L +PP +
Sbjct: 715 LMPVITRSLSQSALEDLINPMIELIQCETSVKLLDRRFLMHVSICYGTHTFLDLFLPPIV 774
Query: 204 VAVACITAAARGLRVRMSVNELCALTRTPAAAAELVARHVERVLA 248
A A + R + + S+ L A P A+ ++ +V R++A
Sbjct: 775 EACASMN-CDRSVVAKESIMWL-AKRYGPVICAKFISSNVLRIMA 817
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 227 ALTRTPAAAAELVARHVERVLARETQPQEPRTRVSQAHK---QTTP-EHTELPD-TPTDV 281
A AAA A +++ ++ +E +P PRT V + K +T+P + ++PD P ++
Sbjct: 306 AAAAATAAAIGTAAINMDTLIDKEPEPSPPRTPVLETQKTFDRTSPTDGVQVPDEVPPEI 365
Query: 282 QD 283
D
Sbjct: 366 LD 367
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.133 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,196,840
Number of Sequences: 27539
Number of extensions: 213628
Number of successful extensions: 845
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 821
Number of HSP's gapped (non-prelim): 22
length of query: 286
length of database: 12,573,161
effective HSP length: 81
effective length of query: 205
effective length of database: 10,342,502
effective search space: 2120212910
effective search space used: 2120212910
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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