Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001197-TA|BGIBMGA001197-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 131 2e-30
09_02_0462 + 9583558-9584910 41 0.002
11_04_0007 - 12074472-12074538,12074908-12075116,12077202-120774... 38 0.020
08_02_1519 + 27646256-27646960 33 0.76
08_01_0849 - 8336065-8336736,8336812-8337051,8337143-8337205,833... 32 1.3
01_06_1334 + 36389179-36389289,36389777-36389839,36389930-363901... 32 1.3
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 30 4.0
06_03_1274 + 28897491-28897707,28897804-28897935,28898029-288980... 30 5.3
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 29 7.0
01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167... 29 9.3
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 131 bits (316), Expect = 2e-30
Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 33/300 (11%)
Query: 9 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 68
+QAV++ D+F F P+T +P L + VP+I+Y L L GV E +FCC + Q++
Sbjct: 26 LQAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQV 85
Query: 69 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMN 128
KEH+ K + M + + S + GD +R + ++ G FVL ++I+NMN
Sbjct: 86 KEHLGKAGWTGKPAAREMTVTAVESHDAISAGDALRVMYGRGVIHGDFVLISGDTISNMN 145
Query: 129 FASLLEQHKQTCKKDKGTAMTLVYK----KLSWEHPLISSDRSTFLAANENTKKVLVHKR 184
L++HK KKD MT+V K + + +D +A + TK++L ++
Sbjct: 146 LKDALQEHKDRRKKDPLAVMTMVIKHSKPSILTNQTRLGND-EIVMAIDPETKELLYYED 204
Query: 185 YRPKSKEKIISLPLDLVLNNSEVKLHHNL------------------------VDTNIAL 220
R +++ D++ +N ++LH+N+ D I +
Sbjct: 205 -RADVSNLYVTIDKDILASNPTLQLHNNMEITPNILHYFKSTYFSQIFFYLCSQDCYIDI 263
Query: 221 CSPTVPPLFSDNFDFQ-TRDDFIHGILINEEILASSLYYTLLKSNQYAAAITNWKTYQTV 279
CSP V LF+DNFD+Q R F+ G+L+ ++I+ +Y ++S+ YAA I N+++Y TV
Sbjct: 264 CSPEVLSLFTDNFDYQHLRRHFVKGLLV-DDIMGYKIYTHEIRSS-YAARIDNFRSYDTV 321
Score = 77.4 bits (182), Expect = 3e-14
Identities = 56/170 (32%), Positives = 91/170 (53%), Gaps = 12/170 (7%)
Query: 374 FLQEVIDSLARGYDEKLKCDYLILEINSSRYAYNIQLNEVNFFVVRALLSMPVLSEAK-- 431
F +EV ++ R D + D LILEIN+ R +Y++Q + + +++ +++
Sbjct: 591 FEKEVEETFQRALDG-IHQDNLILEINALRLSYSLQHADCAGALFHSVMRSALVAAQSTN 649
Query: 432 -NVLTTVKDILKYFRPVLANYIKSKSSIMDCLRAVEDTCL-NCEWLDGKSGQILHLLYEA 489
N+L T + L ++ +L NY KS M+ L E+ C N + +IL LY+
Sbjct: 650 GNLLKTTAEALGKWKDLLRNYTKSVDEEMEILLKFEEMCQENTKEFSPLFSKILPYLYDK 709
Query: 490 DVVDEDSLVDWYAELKENANP----FVKQPSLVKFFEWLQEASEESDDSE 535
+VV ED+++ W AE KENA+ FVKQ F +WL+EA EE ++ E
Sbjct: 710 EVVSEDAILRW-AEEKENADESDKVFVKQSE--AFIQWLKEAEEEDEEEE 756
>09_02_0462 + 9583558-9584910
Length = 450
Score = 41.1 bits (92), Expect = 0.002
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 482 ILHLLYEADVVDEDSLVDWYAELKENANPFVKQPSLVKFFEWLQEASEESDD 533
+L LY+ DV+DE+ + WY E + F EWLQ A ES++
Sbjct: 398 VLKALYDGDVLDEEVITQWYNESVAGGKESQVVKNAKPFVEWLQSADSESEE 449
>11_04_0007 -
12074472-12074538,12074908-12075116,12077202-12077463,
12077547-12078043,12078651-12078719,12079258-12079363,
12080272-12080295,12081184-12081242,12081383-12081520
Length = 476
Score = 37.9 bits (84), Expect = 0.020
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 481 QILHLLYEADVVDEDSLVDWYAELKENANPFVKQ---PSLVKFFEWLQEASEE 530
+I+ LY+ DV+ ED+++ W+ ++ +NP +Q +L F +WL+EA EE
Sbjct: 426 EIIRTLYDQDVLAEDTILLWF---RKGSNPKGRQSFVKALEPFVKWLEEAEEE 475
>08_02_1519 + 27646256-27646960
Length = 234
Score = 32.7 bits (71), Expect = 0.76
Identities = 25/103 (24%), Positives = 42/103 (40%)
Query: 86 MDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMNFASLLEQHKQTCKKDKG 145
M+ + + D C M +V EL A F+ G +++ S + K+ K K
Sbjct: 77 MECSLELLDLCNAMNEVFTELKAIIQDLQVFLRKGDDAVLQAKIQSYIHLVKKAKKHSKK 136
Query: 146 TAMTLVYKKLSWEHPLISSDRSTFLAANENTKKVLVHKRYRPK 188
T +V K L+S R + E+T +L+ + PK
Sbjct: 137 TLKKVVLDKECRIVKLLSEARENTTSLFESTMHLLLKQIEMPK 179
>08_01_0849 -
8336065-8336736,8336812-8337051,8337143-8337205,
8337686-8337796
Length = 361
Score = 31.9 bits (69), Expect = 1.3
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 9 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 68
++A++++ F + PLT + P ++ A P+I + +E+L GV E +L + +
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 69 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKG--YFVLAGINSITN 126
++ +D + ++T + ++ T G + D G +FVL + I+
Sbjct: 61 LNFLKDFEDKLGI-TITCSQE---TEPLGTAGPLALARDKLVDGSGEPFFVL-NSDVISE 115
Query: 127 MNFASLLEQHK 137
FA L++ HK
Sbjct: 116 YPFAELIKFHK 126
>01_06_1334 +
36389179-36389289,36389777-36389839,36389930-36390169,
36390245-36390916
Length = 361
Score = 31.9 bits (69), Expect = 1.3
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 9 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 68
++A++++ F + PLT + P ++ A P+I + +E+L GV E +L + +
Sbjct: 1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKEVGVTEVVLAINYRPEVM 60
Query: 69 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKG--YFVLAGINSITN 126
++ +D + ++T + ++ T G + D G +FVL + I+
Sbjct: 61 LNFLKDFEDKLGI-TITCSQE---TEPLGTAGPLALARDKLVDGSGEPFFVL-NSDVISE 115
Query: 127 MNFASLLEQHK 137
FA L++ HK
Sbjct: 116 YPFAELIKFHK 126
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 30.3 bits (65), Expect = 4.0
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 9 VQAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGGVGEAIL 59
++A++++ F + PLT + P ++ P+I + +E+L GV E +L
Sbjct: 1 MKALILVGGFGTRLRPLTLSVPKPLVDFGNKPMILHQIEALKEVGVTEVVL 51
>06_03_1274 +
28897491-28897707,28897804-28897935,28898029-28898096,
28898216-28898280,28898468-28898534,28898630-28898917,
28898995-28899102,28899236-28899487,28899918-28899997,
28900092-28900185,28900728-28900810,28901319-28901873,
28902085-28902616
Length = 846
Score = 29.9 bits (64), Expect = 5.3
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 78 NKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMNFASLLEQHK 137
+ +LW ++ + C T M ++ A+ L GY VL G+ T ++ ++ H
Sbjct: 225 SSTLWGSLDNLFVTNQSECSTTDGKMPSINDASELDGYRVLMGVRHSTRPHYG--VQFHP 282
Query: 138 QTCKKDKGTAMTLVYKKLSWEHPL 161
++ G + +KK++ + L
Sbjct: 283 ESVATHYGRQIFQNFKKITTDFGL 306
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 29.5 bits (63), Expect = 7.0
Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 11/172 (6%)
Query: 66 QKIKEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLK-GYFVLAGINSI 124
Q + +++ D K L S + ++D C+T+ + ++DA L + A +
Sbjct: 498 QAVVASLEESTDKKELESQLESTSVELADLCKTVASLQEQIDAERTLSLQHKAYADMADA 557
Query: 125 TNMNFASLLEQHKQTCKKDKGTAMTLVYKKLSWEHPLISSDRSTFLAANENTKKVLVHKR 184
+ + L+ K +G+ TL +L E + L + K+ K+
Sbjct: 558 DKKSLEAQLQSAHADIGKLRGSIETL-ESELQKEKTMYEE-----LVVQMESMKIESEKK 611
Query: 185 YRPKSKEKIISLPLDLVLNNSEVKLHHNLVDTNIALCSPTVPPLFSDNFDFQ 236
+S ++ + L LV+N+ KLH + D C FS Q
Sbjct: 612 LGVESAKEALEARL-LVVNSEIAKLHGTVNDLE---CDAAKEKAFSSELKMQ 659
>01_03_0074 +
12215414-12215603,12216178-12216236,12216605-12216703,
12216820-12216946,12216989-12217252,12217382-12217503,
12217575-12217646
Length = 310
Score = 29.1 bits (62), Expect = 9.3
Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Query: 123 SITNMNFASLLEQHKQTCKKDKGTAMTLVYKKLSWEHPLI-SSDRSTFLAANENTKKVL- 180
S+T N AS L++HK+ +K+ L+ +K + P++ +++ S+ N + +
Sbjct: 105 SLTRDNIASYLQKHKKRLQKEYQKHQNLLEQK-DQQLPIVDNTNTSSIQQKNMHYESCYN 163
Query: 181 VHKRYRPKSKEKIISLPLDLVLNNSEVKLHHNLVDTNIALCSPTVPPLFSD--NFDFQTR 238
H +PK KE + L N HH+ N+ + PP ++ F+
Sbjct: 164 EHSNKQPKLKEPTLLTANYHGLRNMH---HHHKNIINMEPSNVLRPPNLNNAKGFNMPFN 220
Query: 239 DDFIHGILINEEILASSLYYTLLKSNQYAAAITNWKTYQT 278
+ + + +++A +Y ++ A A T W+ T
Sbjct: 221 KEGVDEAIYQSQLMAHQVY----ANHVDATAQTTWEVTMT 256
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,801
Number of Sequences: 37544
Number of extensions: 515603
Number of successful extensions: 1190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1176
Number of HSP's gapped (non-prelim): 12
length of query: 535
length of database: 14,793,348
effective HSP length: 85
effective length of query: 450
effective length of database: 11,602,108
effective search space: 5220948600
effective search space used: 5220948600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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