GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001197-TA|BGIBMGA001197-PA|IPR003307|eIF4-
gamma/eIF5/eIF2-epsilon
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   4e-05
SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)                      43   5e-04
SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)                    43   5e-04
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 38   0.027
SB_58593| Best HMM Match : W2 (HMM E-Value=0.0069)                     35   0.19 
SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)                    32   1.3  
SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13)                   31   2.3  
SB_3408| Best HMM Match : FG-GAP (HMM E-Value=0.098)                   31   2.3  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   3.1  
SB_8432| Best HMM Match : IlvC (HMM E-Value=4)                         31   3.1  
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)               29   9.3  
SB_41967| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.3  
SB_46662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.3  

>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 747

 Score = 46.8 bits (106), Expect = 4e-05
 Identities = 20/52 (38%), Positives = 36/52 (69%)

Query: 371 TKMFLQEVIDSLARGYDEKLKCDYLILEINSSRYAYNIQLNEVNFFVVRALL 422
           +++F  EV++++  G  + +  D +ILEIN+S+YAYN+   +VN  + +ALL
Sbjct: 277 SRLFYNEVLETIRLGVVDGVSGDNMILEINASKYAYNVTFRDVNQSIGKALL 328



 Score = 34.3 bits (75), Expect = 0.25
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 465 VEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVDWYA 502
           ++D  L+  W        LHLLYE DV+DE  ++ W+A
Sbjct: 680 IQDFFLDNAWCRDTLQVCLHLLYEMDVLDEAVILHWHA 717


>SB_51535| Best HMM Match : W2 (HMM E-Value=4e-29)
          Length = 770

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)

Query: 441 LKYFRPVLANYIKSKSSIMDC-LRAVEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVD 499
           +K  +P+L  ++  K  +  C L A++  C       G   ++  LLY+ +VVDE++ V 
Sbjct: 672 IKKLKPLLDKFLLEKIDLQVCALYALQVFCHTNNHPKGLLLRMFMLLYDLEVVDEEAFVK 731

Query: 500 WYAELKENANPFVKQPSLVK-FFEWLQEASEESDDSE 535
           W  ++ E      K    V  +  WL+ A EE  +SE
Sbjct: 732 WKEDVNEKYPGKGKALFQVNTWLTWLETADEEGSESE 768


>SB_25352| Best HMM Match : W2 (HMM E-Value=9.1e-20)
          Length = 457

 Score = 43.2 bits (97), Expect = 5e-04
 Identities = 23/86 (26%), Positives = 40/86 (46%)

Query: 444 FRPVLANYIKSKSSIMDCLRAVEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVDWYAE 503
           + P+LA +  +  S  + L  V++ C +         +I+ L Y+ D++ EDS++ WY  
Sbjct: 247 YAPLLAAFTTTAKSEKNLLIKVQEYCYDNMNFMKVFQKIVLLFYKTDILSEDSIIAWYKG 306

Query: 504 LKENANPFVKQPSLVKFFEWLQEASE 529
                   +    + K  EWLQ A E
Sbjct: 307 ENSTKGKSMFLEQMKKMIEWLQSAEE 332


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 37.5 bits (83), Expect = 0.027
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 3/87 (3%)

Query: 447  VLANYIKSKSSI-MDCLRAVEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVDWY--AE 503
            +L  YI S S++ +  L A++      +   G         Y+ D+V E++   W    +
Sbjct: 1174 LLQKYIDSDSNLELQALYALQSLTEKLDHPSGFLRSYFEDFYDEDIVQEEAFYAWEKSTD 1233

Query: 504  LKENANPFVKQPSLVKFFEWLQEASEE 530
              E       Q S  +FFEWL+ A EE
Sbjct: 1234 PAEQTGKGTAQASTQRFFEWLRSAEEE 1260


>SB_58593| Best HMM Match : W2 (HMM E-Value=0.0069)
          Length = 160

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 465 VEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVDWYA 502
           ++D  L+  W        LHLLYE DV+DE  ++ W+A
Sbjct: 41  IQDFFLDNAWCRDTLQVCLHLLYEMDVLDETVILHWHA 78


>SB_41818| Best HMM Match : Brix (HMM E-Value=0.015)
          Length = 170

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 163 SSDRSTFLAANENTKKVLVHKRYRPK-SKEKIISLPLDLVLNNSEVKLHHNLVDTNIAL 220
           S+D  ++    E T KVL+    RPK    K+ S   +L+LNN   +L H++     AL
Sbjct: 84  STDELSYYFKREVTPKVLITSSDRPKHGHGKMTSHKPELILNNFNTRLGHSVARVLAAL 142


>SB_33691| Best HMM Match : Ras (HMM E-Value=2.8e-13)
          Length = 270

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 39  VPLIDYVLESLALGGVGEAILFCCQNGQKIKEHVQKHQDNKSLWSLTMD---IQILMSDT 95
           +P  DY +  L  GGVG+  L     G K  E      D+  + S+ MD       + DT
Sbjct: 8   LPPFDYKISILGAGGVGKTSLLKTFFGHKFSEKHVPTVDDYFIHSVNMDGVYYSTCIVDT 67

Query: 96  CQTMG-DVMRELDAAALLKGYFVLAGINS 123
             T    VMR L A    + + V+  INS
Sbjct: 68  AGTYAFPVMRRL-AIHTCQAFIVVFAINS 95


>SB_3408| Best HMM Match : FG-GAP (HMM E-Value=0.098)
          Length = 451

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 240 DFIHGILINEEILASSLYYTLLKSNQYAAAITNWKTYQ 277
           DF+      EE+L++  +   L SNQY A    W+ YQ
Sbjct: 45  DFVTNQTAREELLSAYHFKLALHSNQYHAGEVRWEQYQ 82


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 170  LAANENTKKVLVHKRYRPKSKEKIISLPLDLVLNNSEVKLHHNL 213
            L   + T+ +++H R+RPK    +I++  D++  +   K+ H L
Sbjct: 1022 LLLGDKTELLVLHARHRPKPNLSLINVGSDVIEISDSAKMEHGL 1065


>SB_23834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 452 IKSKSSIMDCLRAVEDTCLNCEWLDGKSGQILHLLYE 488
           I +K     C  A+  + L  EW+ GKS Q+L+L+YE
Sbjct: 82  IDAKFKTFGCGSAIASSSLATEWVKGKS-QLLYLVYE 117


>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 16/67 (23%), Positives = 37/67 (55%)

Query: 440 ILKYFRPVLANYIKSKSSIMDCLRAVEDTCLNCEWLDGKSGQILHLLYEADVVDEDSLVD 499
           +LK  R  L+N+ K++ + +  +R++    ++ +++  KS  I++L  + + +  D  VD
Sbjct: 300 LLKPRRSKLSNFFKAQLNQIKKVRSMLYQLISDDYVTWKSEGIVNLTEKIEALSNDQYVD 359

Query: 500 WYAELKE 506
           W    +E
Sbjct: 360 WKQAYRE 366


>SB_8432| Best HMM Match : IlvC (HMM E-Value=4)
          Length = 221

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 170 LAANENTKKVLVHKRYRPKSKEKIISLPLDLVLNNSEVKLHHNL 213
           L   + T+ +++H R+RPK    +I++  D++  +   K+ H L
Sbjct: 169 LLLGDKTELLVLHARHRPKPNLSLINVGSDVIEISDSAKMEHGL 212


>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
          Length = 1508

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 407  NIQLNEVNFFVVRALLSMPVLSEAKNVLTTVKDILKYFR--PVLANYIKSKSSIMD 460
            N+++++     + +LLS P+ S+ +  L T +  L+YF   P+  N   S  S++D
Sbjct: 1309 NVKVDKSFIIALTSLLSKPLESDGEAALQTQRVFLEYFHLSPLKVNLSFSLESVVD 1364


>SB_41967| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 10 QAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGG 53
          QAV++     S   P++++ P   L V  +PLI Y + +L   G
Sbjct: 52 QAVIMAAGSGSRMYPISEDIPKALLPVGNLPLIWYPINTLEKAG 95


>SB_46662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 10 QAVVIMDTFNSNFSPLTDNKPMGFLEVAGVPLIDYVLESLALGG 53
          QAV++     S   P++++ P   L V  +PLI Y + +L   G
Sbjct: 5  QAVIMAAGSGSRMYPISEDIPKALLPVGNLPLIWYPINTLEKAG 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,663
Number of Sequences: 59808
Number of extensions: 596531
Number of successful extensions: 1621
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 17
length of query: 535
length of database: 16,821,457
effective HSP length: 86
effective length of query: 449
effective length of database: 11,677,969
effective search space: 5243408081
effective search space used: 5243408081
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)