GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001196-TA|BGIBMGA001196-PA|IPR008331|Ferritin and Dps,
IPR009040|Ferritin-like, IPR009078|Ferritin/ribonucleotide
reductase-like
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    29   0.68 
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po...    26   3.6  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.8  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.4  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 124 FRYSLKMEEQVNQLLEEIVTEANDIKD-YHCADFVTSVYLSEQIQSINEINHYIIK-LSS 181
           F + +  +E +++ +    + +ND +D      F   V L+E ++S +EI HY+++ L S
Sbjct: 193 FVFLVTKQEAIDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHYLLQPLRS 252

Query: 182 FGDD 185
           F  D
Sbjct: 253 FVSD 256


>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 90  MQGFIKYQLIRGNIPNICGIEKPNLPDNLP-LIEAFRYSLKMEEQVNQLLEE 140
           +Q F K    +G++PN   I K    +NL  +IEA  ++ K  +++ +  +E
Sbjct: 262 VQYFEKNYQYKGDVPNFEDISKMEKENNLDIMIEASGFNKKQSKELEKYRQE 313


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 154 ADFVTSVYLSEQIQSINEINHYIIKLSSFG 183
           +DF T VY+S  I  +N+I H  + + S G
Sbjct: 16  SDFKTPVYISRSISILNKIFHPCMYIYSRG 45


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 61  LAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNIPNIC--GIEKPNLPDNL 118
           LA  F+NVK+LY G   +      EE   +Q    +Q  +G IP I     + P+   + 
Sbjct: 83  LAYLFINVKALYEGTQTYSFVQALEEF-CIQQLRTFQQ-QGYIPVITWPNTDSPSATTSS 140

Query: 119 PLIEAFRYSL 128
           P+     YS+
Sbjct: 141 PISRNPEYSV 150


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,138
Number of Sequences: 5004
Number of extensions: 41932
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 4
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 52 (25.0 bits)