GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001196-TA|BGIBMGA001196-PA|IPR008331|Ferritin and Dps,
IPR009040|Ferritin-like, IPR009078|Ferritin/ribonucleotide
reductase-like
         (213 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin prot...    67   8e-12
AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin pro...    65   3e-11
AF016683-1|AAB66199.2| 1216|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z66565-6|CAA91481.1|  317|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81544-8|CAB04433.3|  399|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF106592-2|AAK21364.1|  170|Caenorhabditis elegans Ferritin protein
           2 protein.
          Length = 170

 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 40/143 (27%), Positives = 68/143 (47%)

Query: 44  INRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNI 103
           +N+QI  E   +  YLS++  F            FF +   EE +H    ++ Q +RG  
Sbjct: 16  VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGR 75

Query: 104 PNICGIEKPNLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLS 163
             +  I+KP   +    ++AF  +L +E+  N+ L ++ + A +  D H  DF+   YL 
Sbjct: 76  VVLQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTAGNHNDAHLTDFIEEKYLD 135

Query: 164 EQIQSINEINHYIIKLSSFGDDI 186
           EQ++SINE    +  L   G  +
Sbjct: 136 EQVKSINEFARMVANLKRVGPGV 158


>AF016447-16|AAG24016.1|  170|Caenorhabditis elegans Ferritin
           protein 1 protein.
          Length = 170

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 39/140 (27%), Positives = 63/140 (45%)

Query: 44  INRQIQTEQQVAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNI 103
           +N+QI  E   +  YLS++  F            FF +   EE  H    ++ Q +RG  
Sbjct: 16  VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGR 75

Query: 104 PNICGIEKPNLPDNLPLIEAFRYSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLS 163
             +  I+KP   +   ++EAF  +L +E   N  L ++   A    D H  +++   YL 
Sbjct: 76  VAMQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQRNDAHLTNYIQEKYLE 135

Query: 164 EQIQSINEINHYIIKLSSFG 183
           EQ+ SINE   +I  +   G
Sbjct: 136 EQVHSINEFARHIANIKRAG 155


>AF016683-1|AAB66199.2| 1216|Caenorhabditis elegans Hypothetical
           protein K09F6.3 protein.
          Length = 1216

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 148 IKDYHCA--DFVTSVYLSEQIQSINEINHYIIKLSSFGDDIHAIHNFDTSLIKLFPFSNR 205
           +KD+     D  T V L E I S+N +N   ++LSSF     AI    ++L   F  + +
Sbjct: 678 VKDFEKTGKDAATKVKLKEVIASLNSLNSIGLQLSSFATPFTAIGQSFSALDAFFVSNGK 737

Query: 206 L 206
           +
Sbjct: 738 I 738


>AF067617-4|AAC17557.1|  381|Caenorhabditis elegans Hypothetical
           protein T04D1.2 protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 126 YSLKMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLSEQIQSINEIN-HYIIKLSSFGD 184
           Y++K+E+ +N   +EI+   ND++ +    F+   +LS ++ S+  +  H       F D
Sbjct: 264 YNIKIEDLMNNNCKEIILWNNDLQIFEITKFICH-WLSGKLPSLERLRLHMFHDWEIFED 322

Query: 185 DIHAIHN 191
            +  I N
Sbjct: 323 ILIGIDN 329


>Z66565-6|CAA91481.1|  317|Caenorhabditis elegans Hypothetical
           protein T04F8.7 protein.
          Length = 317

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 27  YNYSNVKKHTACKIADLINRQIQTEQQVAQHYL----SLAVTFLNVKSLYHGAGGFFMKM 82
           YNY  +K+H+  +  +   R I T++ + Q  +     +A   L + SL   A       
Sbjct: 103 YNYPEIKQHSYMEDRNEEERHISTKEHIKQIGVPVLPGIASAILPISSLELAAAPVATDQ 162

Query: 83  YFEELDHMQGFIKYQLIRGN 102
               L H++   K+  +RG+
Sbjct: 163 NRAYLRHLENHKKFDTLRGD 182


>Z81544-8|CAB04433.3|  399|Caenorhabditis elegans Hypothetical
           protein F49C5.4 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)

Query: 129 KMEEQVNQLLEEIVTEANDIKDYHCADFVTSVYLSEQIQSINEINH-YIIKLSSFGDDIH 187
           K++  V+QL +E V  A  I D    D      LS +IQ++ E+NH  I+KL    + + 
Sbjct: 46  KVKLGVHQLTKEKV--AVKIMDKAKMDAKAQKLLSREIQAMEEMNHPNIVKLFEVVETLT 103

Query: 188 AIH 190
            +H
Sbjct: 104 RVH 106


>AC024808-1|AAK29927.1|  309|Caenorhabditis elegans Hypothetical
          protein Y53G8AM.4 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 54 VAQHYLSLAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLI 99
          +A H+  +  TFL + S++H    +  +++F  L +  GF  Y  I
Sbjct: 13 IALHFCGIITTFLPISSIFHDNFEYLNEIWF--LVYFYGFCVYSNI 56


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.139    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,186,842
Number of Sequences: 27539
Number of extensions: 211548
Number of successful extensions: 510
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 8
length of query: 213
length of database: 12,573,161
effective HSP length: 78
effective length of query: 135
effective length of database: 10,425,119
effective search space: 1407391065
effective search space used: 1407391065
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 58 (27.5 bits)