GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001195-TA|BGIBMGA001195-PA|undefined
         (150 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    30   0.17 
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   4.9  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    25   6.5  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    24   8.5  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.9 bits (64), Expect = 0.17
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 70  TPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQIGKTQ 129
           TP K     ++  K+D +  R + ++ + E   A  + E+LL  +   D Q +I +G+T 
Sbjct: 461 TPVKVAGRSEQSNKKDTEFARTKSYREQREFLPAFAVREQLL--SVIRDNQVLIVVGETG 518

Query: 130 VNRFTY--KFKYNSG 142
             + T   +F Y  G
Sbjct: 519 SGKTTQLAQFLYEDG 533


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 54  HGMTHKEANYFIFKIDTPTKAVID 77
           HG+T KE    I+KI T T A +D
Sbjct: 177 HGITEKEELQHIYKILTLTPASLD 200


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 69  DTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKAC 104
           DT  K V DL     +D   VR  FF   +E++K+C
Sbjct: 211 DTDVKIVNDLCSFVPKDW--VRDEFFDTLKEKKKSC 244


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 78  LKEEYKRDVDIVRQRFFKVKEEERKACTLEEE 109
           L++++++  +IV+Q FF+V +      TL  E
Sbjct: 357 LQQQFRQGEEIVKQSFFQVPDYNILVATLLRE 388


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.139    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,082
Number of Sequences: 5004
Number of extensions: 30672
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 4
length of query: 150
length of database: 2,362,478
effective HSP length: 67
effective length of query: 83
effective length of database: 2,027,210
effective search space: 168258430
effective search space used: 168258430
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)