Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001195-TA|BGIBMGA001195-PA|undefined
(150 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0784 - 23130783-23131273,23131701-23131778,23131913-231319... 35 0.032
03_06_0640 + 35230664-35231065,35231957-35232202 30 0.90
05_01_0112 - 757514-758444,758525-758571,759074-759236,759861-76... 29 1.2
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 29 1.6
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 28 3.6
05_06_0189 + 26257587-26257791,26257962-26258003,26258064-262584... 27 6.4
02_04_0003 + 18832467-18832543,18832627-18832849,18832985-188333... 27 6.4
11_08_0084 + 28260647-28262575 27 8.4
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608... 27 8.4
>12_02_0784 -
23130783-23131273,23131701-23131778,23131913-23131969,
23132062-23132116,23132738-23133010
Length = 317
Score = 34.7 bits (76), Expect = 0.032
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 1 MPTYELALLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKE 60
M YE+ L+ E++ + ++ + + G I + N G R + YK +
Sbjct: 129 MRHYEVVYLIHEDRVEEVEDVVSKVQDFVREKKGRIWRLNNWGLRRLAYKIKKA----RH 184
Query: 61 ANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACT 105
ANY + + K + D K +D I+R K E + C+
Sbjct: 185 ANYILMNFEIQAKYINDFKTLLDKDERIIRHLVMKRDEAITEDCS 229
>03_06_0640 + 35230664-35231065,35231957-35232202
Length = 215
Score = 29.9 bits (64), Expect = 0.90
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 4 YELALLLR-NMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPY----KSTAHGM-- 56
YE ++LR +M + E ++R + G + + N G P+ Y +++ G+
Sbjct: 110 YETMVVLRPDMSEEERLALIQRYEELLVAGGAMYVEVFNRGVIPLAYSIRKRNSRTGLPS 169
Query: 57 THKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEE 100
T+ + Y + T +++ L+ D D++R FKV++ +
Sbjct: 170 TYYDGIYLLVTYFTKPESLDALQMRLNADDDVIRSTSFKVRKRK 213
>05_01_0112 -
757514-758444,758525-758571,759074-759236,759861-760366
Length = 548
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 4/46 (8%)
Query: 67 KIDTPTKAV----IDLKEEYKRDVDIVRQRFFKVKEEERKACTLEE 108
K+ TP +AV + +E+++R+V++ R+ KVK+E+R+ L E
Sbjct: 49 KVMTPMEAVERRKLKREEQFRREVELRREERRKVKKEKRRIRRLME 94
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 77 DLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDV 119
D+ E +++++ R+R KVKE E+ A L++E + E +
Sbjct: 338 DIHENLVKNMEMWRERIQKVKEREQAAIRLKDEKIEKLEEEKI 380
>07_03_0539 - 19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 60 EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEE 109
E F + +++D K+ K D + + K+++E+ +A LE+E
Sbjct: 1236 ELGPMFFSVKETDTSLLDHKKRQKEDKTAMEEEMEKLRQEQAEAARLEKE 1285
>05_06_0189 +
26257587-26257791,26257962-26258003,26258064-26258436,
26258515-26258656,26259356-26259514,26259599-26259661,
26259992-26260180
Length = 390
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 73 KAVIDLKEEYKRDVDIVRQRFFKVKEEERKA-CTLEEELLPPAYREDVQKMIQIGKTQVN 131
K V +EE + D ++ + F K++EE+RKA +L+ E +D++ M + + N
Sbjct: 241 KDVTPNEEEKEEDKEMTLEEFEKLREEKRKALLSLKTEERKVEIDKDLKSMQPLSNKKEN 300
>02_04_0003 +
18832467-18832543,18832627-18832849,18832985-18833375,
18833766-18834223,18834320-18834607,18834679-18835398
Length = 718
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 12 NMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPYK 50
NM + EL K H C IIR + GF +P K
Sbjct: 454 NMTEQELSCGCKLFEHLGIICSHIIRVLVQYGFTEIPKK 492
>11_08_0084 + 28260647-28262575
Length = 642
Score = 26.6 bits (56), Expect = 8.4
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 71 PTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQ 124
PT AV + +Y +D+V F K EE K LL +Q +Q
Sbjct: 102 PTAAVHSVDHQYSGGLDMVNMAFLKGMEEANKFLPTNTLLLSTDSSTTLQLQVQ 155
>11_04_0321 -
16359390-16359539,16359674-16359746,16360448-16360845,
16360919-16362673,16362751-16362861,16363745-16363962,
16364088-16364196
Length = 937
Score = 26.6 bits (56), Expect = 8.4
Identities = 11/21 (52%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
Query: 105 TLEEELLPPAYREDVQKMIQI 125
+LE+++LPP +R+D+QK I I
Sbjct: 115 SLEKDMLPP-FRQDIQKFICI 134
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.139 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,446,198
Number of Sequences: 37544
Number of extensions: 178112
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 366
Number of HSP's gapped (non-prelim): 9
length of query: 150
length of database: 14,793,348
effective HSP length: 76
effective length of query: 74
effective length of database: 11,940,004
effective search space: 883560296
effective search space used: 883560296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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