Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001195-TA|BGIBMGA001195-PA|undefined
(150 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g64510.1 68414.m07313 ribosomal protein S6 family protein sim... 35 0.027
At2g26450.1 68415.m03173 pectinesterase family protein contains ... 31 0.33
At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) fami... 27 4.0
At4g12340.1 68417.m01952 expressed protein 27 4.0
At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ... 27 4.0
At3g46530.1 68416.m05051 disease resistance protein, RPP13-like ... 27 4.0
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa... 27 4.0
At5g56780.1 68418.m07086 expressed protein contains similarity t... 27 5.3
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ... 27 5.3
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 27 7.1
At1g72990.1 68414.m08441 glycosyl hydrolase family 35 protein si... 27 7.1
At5g53020.1 68418.m06585 expressed protein 26 9.3
At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-relat... 26 9.3
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 26 9.3
>At1g64510.1 68414.m07313 ribosomal protein S6 family protein
similar to plastid ribosomal protein S6 precursor
GB:AAF64311 GI:7582401 from [Spinacia oleracea]
Length = 207
Score = 34.7 bits (76), Expect = 0.027
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 4 YELALLLR-NMPKPELKTSLKRISHAIFDCGGIIRNIENLGFRPMPY---KSTAHGMTHK 59
YE +LR +M + E ++ + GG+ + N G P+ Y K G T+
Sbjct: 103 YETMAVLRPDMSEDERLGLTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKKNKAGETNT 162
Query: 60 --EANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEE 100
+ Y +F T ++++ L+ D DI+R FK+K+ +
Sbjct: 163 YLDGIYLLFTYFTKPESIVPLETVLTADDDIIRSSSFKIKKRK 205
>At2g26450.1 68415.m03173 pectinesterase family protein contains
Pfam profiles: PF01095 pectinesterase,PF04043 plant
invertase/pectin methylesterase inhibitor
Length = 614
Score = 31.1 bits (67), Expect = 0.33
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 66 FKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVK---EEERKACTLEEELLPPAYREDVQKM 122
F +D PT + E D+D+V ++ +K ++++ A + L+ A E V +
Sbjct: 134 FALDNPTTFLKSAIEAVNEDLDLVLEKVLSLKTENQDDKDAIEQCKLLVEDAKEETVASL 193
Query: 123 IQIGKTQVNRF 133
+I T+VN F
Sbjct: 194 NKINVTEVNSF 204
>At4g17610.1 68417.m02633 tRNA/rRNA methyltransferase (SpoU) family
protein similar to TAR RNA loop binding protein [Homo
sapiens] GI:1184692; contains Pfam profile PF00588: SpoU
rRNA Methylase (RNA methyltransferase, TrmH) family
Length = 1850
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 77 DLKEEYKRDVDIVRQRFFKVKEEERK---ACTLEEELLPPAYREDVQKMIQIGK 127
DL+ +DV ++ FK+ EE ++ T +EE L D Q+ I + K
Sbjct: 1595 DLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSEPSSLDFQRKITLSK 1648
>At4g12340.1 68417.m01952 expressed protein
Length = 170
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 59 KEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYRED 118
KE+ + K++ K ++ +E +R D+ R++ FK+ E + C+ + E Y+E+
Sbjct: 84 KESEKVLEKLELQEKNIV--REVTERAKDL-REKEFKIPEPKPMPCSSDHEAWMKCYKEN 140
Query: 119 V 119
+
Sbjct: 141 I 141
>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 847
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 94 FKVKEEERKACTLEEELLPPAYREDVQKMIQI 125
FK E K C L + P Y DV+K+IQ+
Sbjct: 403 FKDMGHELKLCFLYLSVFPEDYEVDVEKLIQL 434
>At3g46530.1 68416.m05051 disease resistance protein, RPP13-like
(CC-NBS class), putative domain signature CC-NBS exists,
suggestive of a disease resistance protein. Closest
homolog in Col-0 to RPP13.
Length = 835
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 78 LKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYREDVQKMIQI 125
LK++ IV FK E K C L + P Y D++K+I +
Sbjct: 394 LKDDSIHVAPIVFDLSFKELRHESKLCFLYLSIFPEDYEIDLEKLIHL 441
>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
family protein low similarity to SP|P95649 CbbY protein
{Rhodobacter sphaeroides}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1055
Score = 27.5 bits (58), Expect = 4.0
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 24 RISHAIFDCGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTK---AVIDLKE 80
++S +FD G++ N E+L R T G+ ++ F K V +KE
Sbjct: 73 KVSAVLFDMDGVLCNSEDLSRRAAVDVFTEMGVEVTVDDFVPFMGTGEAKFLGGVASVKE 132
Query: 81 EYKRDVDIVRQRFFKV 96
D D ++RFF++
Sbjct: 133 VKGFDPDAAKERFFEI 148
>At5g56780.1 68418.m07086 expressed protein contains similarity to
transcription repressor
Length = 488
Score = 27.1 bits (57), Expect = 5.3
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 8/100 (8%)
Query: 14 PKPELKTSLKRISHAIFD--CGGIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTP 71
PK E+ T +H D CG I+ ++E RP+P + N F+F ++
Sbjct: 323 PKSEIFTGQDHHNHKDSDVVCGVILPDMEPCNKRPVPGRKRCEDHKGMRINAFLFLLNQT 382
Query: 72 --TKAVIDLKEEYKRDVDIVRQ----RFFKVKEEERKACT 105
K V D K + + + + + RF + + CT
Sbjct: 383 DREKTVKDEKPDPESHTESIEEEALTRFCEATTKNGLPCT 422
>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
similarity to Golgi-specific DHHC zinc figer protein
[Mus musculus] GI:21728103; contains Pfam profile
PF01529: DHHC zinc finger domain
Length = 477
Score = 27.1 bits (57), Expect = 5.3
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 34 GIIRNIENLGFRPMPYKSTAHGMTHKEANYFIFKIDTPTKAVIDLKEEYKRDVDIVRQRF 93
GI+ NI + +P KE +Y + ++TPT + + K +DI
Sbjct: 283 GILGNIWEIFLSKIPPSMNKFRSFVKEEDYMMMMVETPTSNLGESLVSSKEKIDI-EMGG 341
Query: 94 FKVKEEERKACTLEEELLPPAYREDVQ 120
++ +E K+ +L E L Y ED++
Sbjct: 342 GRIVDESGKSYSLPEILRNLNY-EDLE 367
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 95 KVKEEERKACTL-----EEELLPPAYREDV-QKMIQIGKTQVNRFTYKFKYNSGLDYYP 147
K + R++C+L +LLP ED Q++ Q+G KY+ GL+Y P
Sbjct: 119 KETRKRRRSCSLTVKKRRRKLLPLVPSEDPDQRLAQMGTLASALTALGIKYSDGLNYVP 177
>At1g72990.1 68414.m08441 glycosyl hydrolase family 35 protein
similar to beta-galactosidase GI:2289790 from [Bacillus
circulans]; contains Pfam profile PF01301: Glycosyl
hydrolases family 35
Length = 697
Score = 26.6 bits (56), Expect = 7.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 8 LLLRNMPKPELKTSLKRISHAIFDCGGIIRNIENL 42
L++ + P L+ SL+ + H F CG + + L
Sbjct: 663 LVVFELESPHLELSLEAVDHQDFTCGSNVSKVNQL 697
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 26.2 bits (55), Expect = 9.3
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 74 AVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYRE 117
++++L+E K ++ + ++EE+RK C L EE L A +E
Sbjct: 100 SLLELQERLKEKEGLLESKDKAIEEEKRK-CELLEERLVKAEKE 142
>At5g44610.1 68418.m05466 DREPP plasma membrane polypeptide-related
contains Pfam profile: PF05558 DREPP plasma membrane
polypeptide
Length = 168
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 70 TPTKAVIDLKEEYKRDVDIVRQRFFKVKEEERKACTLEEELLPPAYRE 117
+P K + ++EE R+V++V + K +E ++ T EE++ +E
Sbjct: 19 SPAKKEV-VEEEKPREVEVVEEVVVKTEEPAKEGETKPEEIIATGEKE 65
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 26.2 bits (55), Expect = 9.3
Identities = 11/55 (20%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 48 PYKSTAHGMTHKEANYFI-FKIDTPTKAVIDLKEEYKRDVDIVRQRFFKVKEEER 101
P + +H + + N F+ D P++ V+ E + DV+ ++++ ++++R
Sbjct: 110 PPQELSHELKQERINLFLAVASDLPSQEVLSYLERFNWDVERAGAQYYEDRDQQR 164
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.139 0.408
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,882
Number of Sequences: 28952
Number of extensions: 156683
Number of successful extensions: 427
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 15
length of query: 150
length of database: 12,070,560
effective HSP length: 75
effective length of query: 75
effective length of database: 9,899,160
effective search space: 742437000
effective search space used: 742437000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)
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