Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001194-TA|BGIBMGA001194-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR000924|Glutamyl-tRNA synthetase, class Ic,
IPR007639|Glutaminyl-tRNA synthetase, non-specific RNA-binding region
part 1, IPR007638|Glutaminyl-tRNA synthetase, non-specific RNA-binding
region part 2, IPR005113|uDENN, IPR001194|DENN, IPR011035|Ribosomal
protein L25-like
(2195 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1632| Best HMM Match : No HMM Matches (HMM E-Value=.) 365 e-100
SB_24326| Best HMM Match : DENN (HMM E-Value=0) 283 8e-76
SB_11708| Best HMM Match : Kunitz_BPTI (HMM E-Value=7.2) 108 4e-23
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 84 1e-15
SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38) 63 2e-09
SB_50069| Best HMM Match : tRNA-synt_1c (HMM E-Value=3e-31) 57 1e-07
SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24) 50 2e-05
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25) 43 0.003
SB_50003| Best HMM Match : PAN (HMM E-Value=0.044) 34 1.1
SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35) 33 1.9
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 3.4
>SB_1632| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 700
Score = 365 bits (899), Expect = e-100
Identities = 164/231 (70%), Positives = 193/231 (83%), Gaps = 11/231 (4%)
Query: 242 GENYKSDGYVVTSHTKRLLEEHLKITGGKVRTRFPPEPNGILHIGHAKAININFGYAAAH 301
G+NY + GYVVT T +LL+EHL+ T G+V+TRFPPEPNGILHIGHAKAININFGYA AH
Sbjct: 170 GDNYHTPGYVVTPKTMQLLKEHLERTKGRVQTRFPPEPNGILHIGHAKAININFGYAKAH 229
Query: 302 DGVCFLRYDDTNPXXXXXXXXIGIKDMVEWLGYKPYKITHSSDYFDQLYEWAIQLIKKDL 361
+GVC+LRYDDTNP GI DMV+WLG++P+KITH+SD FD+LYE+A++LIK+
Sbjct: 230 NGVCYLRYDDTNPEKEEEKFFTGILDMVKWLGFEPWKITHASDNFDKLYEYAVELIKRGD 289
Query: 362 AYVCHQKSEDIKGFNPPPSPWRIRPIEESLQLFEDMKNGKIDEGDATLRMKITLEEGKQD 421
AYVCHQ+ E+IKG+NPPPSPWR RPIEESL+LFE ATLRMK TLE+GK D
Sbjct: 290 AYVCHQQYEEIKGYNPPPSPWRERPIEESLRLFE-----------ATLRMKTTLEDGKAD 338
Query: 422 PVAYRIRFKPHHRTGNKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRA 472
PVAYRI+F PHHR+G+KWCIYPTYD+THCLCDSIE ITHSLCTKEFQSRR+
Sbjct: 339 PVAYRIKFTPHHRSGDKWCIYPTYDFTHCLCDSIEDITHSLCTKEFQSRRS 389
Score = 263 bits (645), Expect = 1e-69
Identities = 123/192 (64%), Positives = 150/192 (78%), Gaps = 2/192 (1%)
Query: 471 RAMVVLEPLKIRIVNFPSEQPISIQVPDFPSEPERGSHSVTFDKVIYIEATDFKEEMEKG 530
R M VLEPLK+ I NFPS++ + I+VPD P + +G+H V FD+V+YIE++DF+E MEKG
Sbjct: 491 RVMAVLEPLKVTITNFPSDKAMMIEVPDLPMDASKGNHKVPFDRVLYIESSDFRETMEKG 550
Query: 531 YRRLTPTQSVGLRHAGYVIKVSKVIKDPSGKVLELECTAESTDSSEKPKAFIHWV-SEPI 589
YRRLTP QSVGLRHAGYVIKV KVIK+ SG+V ELE T E T S++KPKAFIHWV S +
Sbjct: 551 YRRLTPEQSVGLRHAGYVIKVKKVIKNASGEVSELEVTCELTSSTDKPKAFIHWVASTAV 610
Query: 590 SIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVM-EAYADSSIKGAKVYDKFQFER 648
E+RLY+ LFKHKNPEDP EVPGGF+SDC D+L V+ A D + KGA + KFQFER
Sbjct: 611 PCEIRLYDRLFKHKNPEDPEEVPGGFVSDCNKDSLTVIPNALVDITAKGAAPFTKFQFER 670
Query: 649 IGFFSVDPDSSQ 660
G+F VDPDSS+
Sbjct: 671 QGYFCVDPDSSK 682
Score = 71.7 bits (168), Expect = 6e-12
Identities = 38/118 (32%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 10 FKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQS-LPLGAGILIYHLATKIKPQTMSKL 68
F+ +GL++QKAKET+KN +++ L + + + +G L+Y LA+ + S++
Sbjct: 8 FQSIGLSQQKAKETMKNEALSQKLEKIVTQAHSKGESDKQSGTLLYVLASSSLKEE-SRV 66
Query: 69 NFICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIVTPEQVEQAV 126
+ + YI S K+ S+ ++ AA +YL ++ +FE+ CG+GV +TPEQ+E+ +
Sbjct: 67 SLLVDYICSKKVSSSAQLTAAFEYLTKTSPVGPIDACKFEQHCGIGVEITPEQIEECI 124
>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
Length = 1281
Score = 283 bits (695), Expect = 8e-76
Identities = 165/394 (41%), Positives = 233/394 (59%), Gaps = 35/394 (8%)
Query: 774 WSVLTGQAYDNTPTIVLHDVKEIETWILRLLSAPVPVPGKTRLELEVLSPTAHSPLLFAL 833
WSV T D + + + EIETWI RLL AP PV G+T++++E+L P ++ L FA
Sbjct: 181 WSVFTCSE-DPKLSPIATQMDEIETWIQRLLLAPAPVIGRTKVDMELLCPESYPSLTFAY 239
Query: 834 PDHTRFTLVDFPLHLPLELLGVDTCLKVLTLIILENKIVVQSRDYNALSMSVMALVAMLY 893
P++TRF L+DFP+H+P+ELLGV+TCLKVLT I+LE K+V+QSRDYNAL+MSV+AL +LY
Sbjct: 240 PENTRFPLIDFPVHIPMELLGVETCLKVLTCILLEQKVVIQSRDYNALTMSVIALTRLLY 299
Query: 894 PLEYMFPAIPLLPSCMSCAEQLLLAPTPFLIGIPATFLTYK-KHFKLPDDIWLVDLDATK 952
PLEYMFP IPLLP+CM+ AEQLLLAPTP++IG+PA+F YK K F++P D+W+ DLD++K
Sbjct: 300 PLEYMFPIIPLLPTCMANAEQLLLAPTPYVIGVPASFFRYKSKDFQIPGDLWVFDLDSSK 359
Query: 953 LISPTGNDQDLPPLPEPEGSVLKSHLKQALNSLT---NTTAEQASALLMPSRRDSVGGAT 1009
+ P D +LP LPE EG VL LK AL +L+ T +A D+ G
Sbjct: 360 MTVPMSAD-ELPDLPEEEGQVLIRRLKMALQALSMPPQTVGNLENAAPDGLLPDNTSG-D 417
Query: 1010 LKVQPTWYKGGAESAPHSAAESRRVS--VTGTASAG---HTPQRHSLASPHGAAQPFNPL 1064
++ G + A V+ ++ T G HT P A Q P
Sbjct: 418 ASIEEHMVFGNDVDSVDVAVRVAIVNFFMSPTVLCGLQEHTRTLRLFPRPVVALQK-GPF 476
Query: 1065 IYGNDVDSVDVATRV-AMAVEFLAEWSLTPCNVAFLRV---------------------Q 1102
+ S VA + +VE+ AEW ++P N A+L++ +
Sbjct: 477 LKSRPKPSDFVAALAESQSVEYFAEWLVSPTNTAYLKINKEQLTRSGQRSVIGFFFVNFR 536
Query: 1103 TGVFDPRQIGDKPKWFADQLQPIRFAVWDDGSSL 1136
G+++P IGDKPKW+++ L+ + + V+D S L
Sbjct: 537 LGIYNPCVIGDKPKWYSEHLETVLYQVYDKESKL 570
Score = 99 bits (238), Expect = 2e-20
Identities = 43/80 (53%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 656 PDSSQTHAPELLRRYPLTNHDDFPLPLDMVYFCQPEGCVSVGPRRAPGPFASRDTTSFVF 715
P T P LLRR+P +HDDFPLP D+V+FCQPE C +V + F+ R+ SF+F
Sbjct: 25 PTLDSTETPRLLRRFPEKDHDDFPLPPDVVFFCQPEACNTVSKK-----FSLREANSFIF 79
Query: 716 TLTDKDSGKTRYGICVNFYR 735
TLTDKD+ K RYG+C+N YR
Sbjct: 80 TLTDKDTNKVRYGVCMNIYR 99
Score = 74.5 bits (175), Expect = 9e-13
Identities = 32/51 (62%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Query: 1812 TARTYLYQGLIGKERSNLWDQMQFWEDAFLDAVSQERDMIGMDQGANEMME 1862
T R YL++GL+ +ERS LWD M FWE+ FLDAV+ ERD +GMDQG EM+E
Sbjct: 1231 TGRRYLFEGLV-RERSPLWDNMDFWENIFLDAVAAERDAVGMDQGPTEMLE 1280
Score = 53.2 bits (122), Expect = 2e-06
Identities = 22/45 (48%), Positives = 34/45 (75%)
Query: 1603 KGMLKVLQAVVHGLEYTYSNFGLGGMASVFQLAEMAHTHYWSREL 1647
KGML++L+AVV G E + N G+GG+AS F+ E+ HT+Y+ R++
Sbjct: 978 KGMLEILRAVVAGYEASVVNHGIGGVASAFKFLEIIHTNYYGRDI 1022
>SB_11708| Best HMM Match : Kunitz_BPTI (HMM E-Value=7.2)
Length = 156
Score = 108 bits (260), Expect = 4e-23
Identities = 47/86 (54%), Positives = 60/86 (69%)
Query: 1971 VRDDGLVLRSTQGTIVERWWYERLVNMTYSPKIRVLCLWRKNGGQTQLHKYYTKKCKALY 2030
V DD ++LR+ G I+ERWWYE++VN+TY PK +VLCLW + G T L K+ TKKCKALY
Sbjct: 51 VSDDCILLRTGAGVIIERWWYEKMVNITYCPKTKVLCLWYRRGEDTLLSKFCTKKCKALY 110
Query: 2031 YCIKEAMERSGRRQDAAELGGEFPVQ 2056
+CIKE M+R+ R G E VQ
Sbjct: 111 FCIKECMQRAAERLRGPNTGTEPRVQ 136
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 84.2 bits (199), Expect = 1e-15
Identities = 43/105 (40%), Positives = 59/105 (56%)
Query: 269 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHDGVCFLRYDDTNPXXXXXXXXIGIKDM 328
G V TRFPPE +G LHIGHAKA +N Y ++G +R+DDTNP I
Sbjct: 16 GNVVTRFPPEASGYLHIGHAKAALLNQYYKNMYEGTLIMRFDDTNPAKENAHFEEVILKD 75
Query: 329 VEWLGYKPYKITHSSDYFDQLYEWAIQLIKKDLAYVCHQKSEDIK 373
+E L +K K TH+SD+FD L + ++++ D AY E +K
Sbjct: 76 LEMLEFKFDKFTHTSDHFDTLIGYCEKMLRMDKAYADDTAPERMK 120
>SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)
Length = 595
Score = 63.3 bits (147), Expect = 2e-09
Identities = 41/106 (38%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 850 LELLGVDTCLKVLTLIILENKIVVQSRDYNALSMSVMALVAMLYPLEYMFPAIPLLPSCM 909
L LG D CL + LI+ E+KI++ S L+ AL +L+P + P IPL P +
Sbjct: 326 LRHLGPDNCLLLFYLILTEHKILIHSLRPALLTSVAEALTNVLFPFTWQCPYIPLCPVAL 385
Query: 910 SCAEQLLLAPTPFLIGIPATFLTYKKHFKLPDDIWLVDLDATKLIS 955
+ +L AP PF+IGI + Y + PDD+ VDLD T +IS
Sbjct: 386 N---DVLCAPCPFIIGIDS---RYFDQYDPPDDVTSVDLD-TIMIS 424
Score = 31.9 bits (69), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 661 THAPELLRRYPLTNHDDFPLPLDMVYFCQPEGCV 694
T+ ++L R+P +++ FPLP + FC P G +
Sbjct: 210 TYHADILSRFPEKDYEGFPLPEAVPMFCLPLGAI 243
>SB_50069| Best HMM Match : tRNA-synt_1c (HMM E-Value=3e-31)
Length = 210
Score = 57.2 bits (132), Expect = 1e-07
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 397 MKNGKIDEGDATLRMKITLEEGK---QDPVAYRIRFKPHHRTGNKWCIYPTYDYTHCLCD 453
MK G +R KI + +DP YR + + H RTGNK+ +YP YD+ + D
Sbjct: 1 MKRGTEYGQSCCIRAKIDYQSPNGTLRDPTIYRCKPETHIRTGNKYKVYPIYDFACPIVD 60
Query: 454 SIEHITHSLCTKEFQSR 470
S+E +TH+L T E+ R
Sbjct: 61 SLEGVTHALRTTEYHDR 77
>SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)
Length = 423
Score = 50.4 bits (115), Expect = 2e-05
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 11/123 (8%)
Query: 888 LVAMLYPLEYMFPAIPLLPSCMSCAEQLLLAPTPFLIGIPATFLTYKKHFKLPDD--IWL 945
+V +++P + +P+LP+ + + L AP PF++G+ +K + +LP + + L
Sbjct: 12 VVTLIFPFIWQHVYVPILPAAL---QHFLDAPVPFIMGLYCASEDFKANLQLPSEASLCL 68
Query: 946 VDLDATKLISPTGNDQDLPPLPEPEGSVLKSHLKQALNSLTNTTAEQASALLMPSRRDSV 1005
VD+D K++SP +DLP P + L L + + + E + L SR S
Sbjct: 69 VDIDNCKVLSP----EDLPEFPNKQD--LIEELLETIEKFNIASQESNNPLSSNSRCSSE 122
Query: 1006 GGA 1008
G +
Sbjct: 123 GNS 125
>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
Length = 945
Score = 42.7 bits (96), Expect = 0.003
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 868 ENKIVVQSRDYNALSMSVMALVAMLYPLEYMFPAIPLLPSCMSCAEQLLLAPTPFLIGI 926
+NKI+ S + L+ A++A++YPL++ + IP+LP+ + L APTP ++G+
Sbjct: 249 KNKILFISSSFVQLTTVTRAMLALMYPLKFSYVYIPILPAALL---DFLRAPTPTIMGV 304
Score = 33.9 bits (74), Expect = 1.5
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 654 VDPDSSQTHA--PELLRRYPLTNHDDFPLPLDMVYFCQPEGCVSVGPRRAPGPFASRDTT 711
+D D+S ++L+R+P + D P + FCQP G + + R T
Sbjct: 13 IDKDTSYGEGLKGKVLQRFPPQDRKDVAFPEGIELFCQPTGWKT--------SYYCRPQT 64
Query: 712 SFVFTLTDKDSGKTRYGICVNFY 734
FV LTD + G +Y C FY
Sbjct: 65 FFVSVLTDME-GDHKYLACFTFY 86
>SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 286
Score = 34.3 bits (75), Expect = 1.1
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 5/128 (3%)
Query: 961 QDLPPLPEPEGSVLKSHLKQALNSLTNTTAEQASALLMPSRRDSVGGATLKVQPTWYKGG 1020
Q LPP P+P + K+ Q L L N T+ A+ P ++D +T+ T
Sbjct: 54 QQLPPAPQPTANPEKAEEPQPLKPLDNYTSAAAAVPSTPPKQDP--RSTVAFGRTTKSSP 111
Query: 1021 AESAPHSAAESRRVSVTGTASAGHTPQRHSLASPHGA-AQPFNPLI-YGNDVDSVDVATR 1078
+ +P RR S+ T Q A P +P N +I N D + V T
Sbjct: 112 VQKSPSRVGHVRRYSLENDQVICSTKQVAGRARPISTQIKPRNTVITRTNSADRLHV-TS 170
Query: 1079 VAMAVEFL 1086
M FL
Sbjct: 171 ARMLWAFL 178
>SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)
Length = 300
Score = 33.5 bits (73), Expect = 1.9
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 796 IETWILRLL-SAPVPVPGKT-RLELEVLSPTAHSPLLFALPDHTRFTLVDFPLHLPLELL 853
+E++I LL P+P PG+T R S T P LP L D+ L L
Sbjct: 223 LESYIYNLLYEVPLPPPGRTMRFNCVKESITCQRPGPNELP------LFDYSLKEMFSWL 276
Query: 854 GVDTCLKVLTLIILENKIVVQS 875
GV+ +++ T ++LE++I++ S
Sbjct: 277 GVENVVELFTCVLLEHQILLLS 298
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 32.7 bits (71), Expect = 3.4
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 917 LAPTPFLIGIPATFLTYKKHFKLPDDIWLVDLDATKLISPTGNDQDLPPLPEPEGSVLKS 976
+ P ++G T + K KL +I+L D DAT + P Q P P K
Sbjct: 741 VTPKEIMVGGTMTGYYFVKEEKLNLNIFLQDQDAT-IDIPVSTTQTTPE-PIYARPYKKR 798
Query: 977 HLKQALNSLTNTTAEQASALLMPSRRDSVGGATLKVQPTWYKGGAESAPHSAAESR---R 1033
Q + + TN ++ L+ RD + +W S+ HS+ +SR R
Sbjct: 799 KSAQLVRAPTNNGLKEVE-LIAKVSRDENSRSQSTSSSSW--STTTSSNHSSVQSRGPMR 855
Query: 1034 VSVTGTASAGHTPQRHSLASPH 1055
VS+ S +P S +S H
Sbjct: 856 VSIHSVTSKPRSPGSTSTSSNH 877
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,755,439
Number of Sequences: 59808
Number of extensions: 2708234
Number of successful extensions: 5562
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 5532
Number of HSP's gapped (non-prelim): 26
length of query: 2195
length of database: 16,821,457
effective HSP length: 94
effective length of query: 2101
effective length of database: 11,199,505
effective search space: 23530160005
effective search space used: 23530160005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 68 (31.5 bits)
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