Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001194-TA|BGIBMGA001194-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR000924|Glutamyl-tRNA synthetase, class Ic,
IPR007639|Glutaminyl-tRNA synthetase, non-specific RNA-binding region
part 1, IPR007638|Glutaminyl-tRNA synthetase, non-specific RNA-binding
region part 2, IPR005113|uDENN, IPR001194|DENN, IPR011035|Ribosomal
protein L25-like
         (2195 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   2.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   5.2  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    25   9.0  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 123 EQAVEKHMVKYKQELLEKRYRFNSGIIMQAVR 154
           +Q +EKH+++YK+ L  KR       IM  VR
Sbjct: 429 DQKLEKHLIEYKKMLKIKRLFGKDRKIMDMVR 460


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 14/74 (18%)

Query: 900 PAIPLLP---SCMSCAEQLLLAPTPFLIGIPATF-----------LTYKKHFKLPDDIWL 945
           P++PLLP   SC +  +  + AP   L  +P+T            L  KK  K  D I  
Sbjct: 649 PSMPLLPRPISCHTTPDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKKDKDIILN 708

Query: 946 VDLDATKLISPTGN 959
           V  ++T+ ++ TGN
Sbjct: 709 VPKESTQSLTTTGN 722


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 923 LIGIPATFLTYKKHFKLPDDIWLVDLDATKL 953
           ++G+P+ +LTY K+  LP++I +   +  K+
Sbjct: 39  VVGVPSIYLTYAKNI-LPNNISIAGQNTYKV 68


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,351
Number of Sequences: 429
Number of extensions: 22861
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 4
length of query: 2195
length of database: 140,377
effective HSP length: 69
effective length of query: 2126
effective length of database: 110,776
effective search space: 235509776
effective search space used: 235509776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)