Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001194-TA|BGIBMGA001194-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR000924|Glutamyl-tRNA synthetase, class Ic,
IPR007639|Glutaminyl-tRNA synthetase, non-specific RNA-binding region
part 1, IPR007638|Glutaminyl-tRNA synthetase, non-specific RNA-binding
region part 2, IPR005113|uDENN, IPR001194|DENN, IPR011035|Ribosomal
protein L25-like
(2195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0564 - 4919294-4919391,4919491-4919620,4919700-4919789,491... 377 e-104
01_01_0608 - 4513604-4513701,4513790-4513919,4514027-4514116,451... 318 3e-86
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 147 8e-35
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 144 5e-34
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 55 6e-07
02_01_0157 - 1090653-1090886,1091205-1091361,1091538-1091638,109... 52 7e-06
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 40 0.023
11_05_0089 + 18975637-18977439 37 0.16
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 36 0.28
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 34 1.1
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 34 1.1
10_07_0117 + 13028336-13028404,13029073-13029174,13031108-130313... 33 2.0
07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400... 32 6.0
05_07_0323 + 29260608-29260836,29262242-29262513,29263349-292634... 32 6.0
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979... 31 7.9
>05_01_0564 -
4919294-4919391,4919491-4919620,4919700-4919789,
4919882-4919987,4920087-4920187,4920347-4920442,
4920549-4920648,4920761-4920897,4920980-4921111,
4921222-4921320,4921397-4921594,4921715-4921892,
4922020-4922075,4922168-4922320,4922422-4922514,
4922605-4922706,4922817-4922878,4922995-4923090,
4923354-4923453,4923546-4923617,4923728-4923775,
4923853-4923996
Length = 796
Score = 377 bits (927), Expect = e-104
Identities = 198/476 (41%), Positives = 281/476 (59%), Gaps = 16/476 (3%)
Query: 2 TPEEIVERFKLLGLNEQKAKETLKNANVTKVLLAALDEVQLQSLPLGAGILIYHLATKIK 61
+P E+ F +GL+++ A+ L N VT L A + E + G L+Y +ATK
Sbjct: 12 SPPELAS-FLAIGLDQRTAENALANRKVTANLTAVIAEAGVSGCDKSVGNLLYTVATKYP 70
Query: 62 PQTMSKLNFICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEKACGVGVIVTPEQ 121
+ + QYI S K+ + ++DAAL +L + ++ +FE+ CGVGV+V+ E+
Sbjct: 71 ANALVHRPVVIQYIVSSKIKTPAQLDAALSFL-STLGPDPLDTAKFEETCGVGVVVSTEE 129
Query: 122 VEQAVEKHMVKYKQELLEKRYRFNSGIIMQAVRADLTWADGKAIKSEVDVQIFDLLGPKT 181
++ V + + + ++E+RY N G + VR W D K IK E+D ++ ++LGPKT
Sbjct: 130 IQSMVTDILKENMEAIVEQRYHINVGSLCGQVRKWHPWGDAKFIKEEIDKRLTEILGPKT 189
Query: 182 EADLXXXXXXXXXXXXGDXXXXXXXXXXXXXXQENVESSEDIGGATSISELMKKLPFHAP 241
EAD S E++ + + + L H
Sbjct: 190 EAD------NVKPVKKKKEKPAKVEEKKTAVAAPAPPSEEELNPYSIFPQPEENLKVHT- 242
Query: 242 GENYKSDGYVVTSHTKR-LLEEHLKITGGKVRTRFPPEPNGILHIGHAKAININFGYAAA 300
E + SDG + +H ++ +LE+HLK TGGKV TRFPPEPNG LHIGHAKA+ I+FG A
Sbjct: 243 -EIFFSDGNIWRAHNRKDILEKHLKATGGKVMTRFPPEPNGYLHIGHAKAMFIDFGLAKE 301
Query: 301 HDGVCFLRYDDTNPXXXXXXXXIGIKDMVEWLGYKPYKITHSSDYFDQLYEWAIQLIKKD 360
+G C+LR+DDTNP I+++V W+G++PYK+T++SDYF +LYE A+ LIKK
Sbjct: 302 RNGHCYLRFDDTNPEAEKKEYIDHIQEIVRWMGWEPYKVTYTSDYFQELYELAVCLIKKG 361
Query: 361 LAYVCHQKSEDIKGFNPPP--SPWRIRPIEESLQLFEDMKNGKIDEGDATLRMKITLEEG 418
LAYV HQ E+IK + SPWR RPIEESL+LFEDM++G + EG ATLRMK ++
Sbjct: 362 LAYVDHQTPEEIKEYREKQMNSPWRDRPIEESLKLFEDMRHGLVAEGKATLRMKQDMQND 421
Query: 419 KQ---DPVAYRIRFKPHHRTGNKWCIYPTYDYTHCLCDSIEHITHSLCTKEFQSRR 471
+ D +AYRI+F PH G+KW IYP+YDY HCL DS+E+ITHSLCT EF RR
Sbjct: 422 NKNMADLIAYRIKFTPHPHAGDKWFIYPSYDYAHCLVDSLENITHSLCTLEFDIRR 477
Score = 119 bits (286), Expect = 3e-26
Identities = 79/219 (36%), Positives = 124/219 (56%), Gaps = 20/219 (9%)
Query: 471 RAMVVLEPLKIRIVNFPSEQPISIQV---PDFPSEPERGSHSVTFDKVIYIEATDFKEEM 527
RAMVVL PLK+ I N I + PD P + + V F + +YIE +DF+ +
Sbjct: 581 RAMVVLHPLKVVINNLDYGTIIDLDAKKWPDAPGDDASAYYKVPFSRTVYIEQSDFRVKD 640
Query: 528 EKGYRRLTPTQSVGLRHAGYVIKVSKVI-KDPSGKVLELECTAESTDSSEKPKAFIHWVS 586
K Y L P ++V LR+A + IK ++VI D S ++E+ + + ++ KPK +HWV+
Sbjct: 641 SKDYYGLAPGKTVLLRYA-FPIKCTEVIYGDNSDNIIEIRAEYDPSKAT-KPKGVLHWVA 698
Query: 587 E------PISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVME-AYADSSIKGAK 639
E P+ +E+RL+E LF +NP + + +L D + +V++ AYA S+ A
Sbjct: 699 EPSPGVNPLKVEIRLFEKLFLSENPVELED----WLGDLNPRSKEVIKGAYAVPSLATAA 754
Query: 640 VYDKFQFERIGFFSVDPDSSQTHAPELLRRYPLTNHDDF 678
+ DKFQFER+G+F+VD DS+ A EL+ +T D +
Sbjct: 755 LGDKFQFERLGYFAVDSDST---AEELVFNRTVTLRDSY 790
>01_01_0608 -
4513604-4513701,4513790-4513919,4514027-4514116,
4514225-4514330,4514442-4514542,4514678-4514773,
4514860-4514959,4515133-4515269,4515563-4515661,
4515740-4515937,4516058-4516235,4516635-4516690,
4516781-4516933,4517248-4517340,4517422-4517523,
4517609-4517650,4517812-4517855,4518087-4518186,
4518323-4518394,4518499-4518621,4519309-4519452
Length = 753
Score = 318 bits (781), Expect = 3e-86
Identities = 174/419 (41%), Positives = 245/419 (58%), Gaps = 39/419 (9%)
Query: 50 GILIYHLATKIKPQTMSKLNFICQYIASGKLDSTLRVDAALDYLLGNINEANVNIEEFEK 109
G L+Y +ATK + + YI S K+ + ++DAAL +L N +++ +FE+
Sbjct: 84 GNLLYTVATKYPTNALVHRPVLIDYIVSTKIKNPAQLDAALSFLT-NTGPDSLDTGKFEE 142
Query: 110 ACGVGVIVTPEQVEQAVEKHMVKYKQELLEKRYRFNSGIIMQAVRADLTWADGKAIKSEV 169
ACGVGV+V+ E+++ V + + KR+ W D KA K E+
Sbjct: 143 ACGVGVVVSIEEIKSTVNE---------VRKRH---------------PWGDAKATKDEI 178
Query: 170 DVQIFDLLGPKTEADLXXXXXXXXXXXXGDXXXXXXXXXXXXXXQENVESSEDIGGATSI 229
D ++ ++LGPKT+AD S E++ +
Sbjct: 179 DKKLAEILGPKTDADNVKPVKKKKEKAAKVEEKKAAVVTAAP------PSEEELNPYSIF 232
Query: 230 SELMKKLPFHAPGENYKSDGYVVTSH-TKRLLEEHLKITGGKVRTRFPPEPNGILHIGHA 288
+ + H E + SDG + +H +K +LE+HLK TGGKV TRFPPEPNG LHIGHA
Sbjct: 233 PQPEENFKVHT--EIFYSDGNIWRAHNSKEILEKHLKATGGKVMTRFPPEPNGYLHIGHA 290
Query: 289 KAININFGYAAAHDGVCFLRYDDTNPXXXXXXXXIGIKDMVEWLGYKPYKITHSSDYFDQ 348
KA+ I+FG A +G C+LR+DDTNP I+++V W+G++PYK+T++SDYF
Sbjct: 291 KAMFIDFGLAKERNGHCYLRFDDTNPEAEKKEYIDHIQEIVHWMGWEPYKVTYTSDYFQA 350
Query: 349 LYEWAIQLIKKDLAYVCHQKSEDIKGFNPPP--SPWRIRPIEESLQLFEDMKNGKIDEGD 406
LYE A++LI+K LAYV HQ +E+IK + SPWR RPIEESL+LFEDM+ G I EG
Sbjct: 351 LYEHAVELIRKGLAYVDHQTAEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIAEGA 410
Query: 407 ATLRMKITLE---EGKQDPVAYRIRFKPHHRTGNKWCIYPTYDYTHCLCDSIEHITHSL 462
ATLRMK ++ + D +AYRI+F PH G+KWCIYP+YDY HC+ DS+E+ITHSL
Sbjct: 411 ATLRMKQDMQNDNKNMSDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCMVDSLENITHSL 469
Score = 122 bits (294), Expect = 3e-27
Identities = 74/200 (37%), Positives = 119/200 (59%), Gaps = 17/200 (8%)
Query: 471 RAMVVLEPLKIRIVNFPSEQPISIQV---PDFPSEPERGSHSVTFDKVIYIEATDFKEEM 527
RAMVVL PLK+ I N E+ I + PD P++ + V F +++YIE TDF+ +
Sbjct: 538 RAMVVLNPLKVVITNLEDEKVIDLDGKMWPDAPADDASSYYKVPFSRIVYIEKTDFRLKD 597
Query: 528 EKGYRRLTPTQSVGLRHAGYVIKVSKVI-KDPSGKVLELECTAESTDSSEKPKAFIHWVS 586
K Y L P +S LR+A + IK ++V+ D ++E+ + + ++ KPK +HWV+
Sbjct: 598 SKDYYGLAPGKSALLRYA-FPIKCTEVVYGDNPDDIIEIRAEYDPSKTT-KPKGVLHWVA 655
Query: 587 ------EPISIEVRLYEPLFKHKNPEDPNEVPGGFLSDCRDDTLKVME-AYADSSIKGAK 639
EP+ +EVRL++ LF +NP + + +L D ++ +V++ AYA S+ A
Sbjct: 656 QPAPGVEPLKVEVRLFDKLFLSENPAELED----WLGDLNPNSKEVIKGAYAVPSLATAV 711
Query: 640 VYDKFQFERIGFFSVDPDSS 659
+ DKFQFER+G+F+VD DS+
Sbjct: 712 LGDKFQFERLGYFAVDTDST 731
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 147 bits (357), Expect = 8e-35
Identities = 82/223 (36%), Positives = 125/223 (56%), Gaps = 7/223 (3%)
Query: 269 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHDGVCFLRYDDTNPXXXXXXXXIGIKDM 328
G+V RF PEP+G LHIGHAKA +N +A + G +R+DDTNP +
Sbjct: 204 GEVCVRFAPEPSGYLHIGHAKAALLNKYFAERYQGRLIVRFDDTNPSKESNEFVENLLKD 263
Query: 329 VEWLGYKPYKITHSSDYFDQLYEWAIQLIKKDLAYVCHQKSEDIKG--FNPPPSPWRIRP 386
+E LG K +T++SDYF +L E A +LIK+ AYV E ++ + S R
Sbjct: 264 IETLGIKYDAVTYTSDYFPKLMEMAEKLIKQGKAYVDDTPKEQMRSERMDGVESKCRNNT 323
Query: 387 IEESLQLFEDMKNGKIDEGDATLRMKITLEE---GKQDPVAYRIRFKPHHRTGNKWCIYP 443
+EE+L L+++M NG +R K+ +++ +DPV YR PHHR G+K+ +YP
Sbjct: 324 VEENLSLWKEMINGSERGMQCCVRGKLDMQDPNKSLRDPVYYRCNTDPHHRIGSKYKVYP 383
Query: 444 TYDYTHCLCDSIEHITHSLCTKEFQSRRAMV--VLEPLKIRIV 484
TYD+ D++E +TH+L + E+ R A +L+ + +R V
Sbjct: 384 TYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILQDMGMRRV 426
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 144 bits (350), Expect = 5e-34
Identities = 82/223 (36%), Positives = 124/223 (55%), Gaps = 7/223 (3%)
Query: 269 GKVRTRFPPEPNGILHIGHAKAININFGYAAAHDGVCFLRYDDTNPXXXXXXXXIGIKDM 328
G+V RF PEP+G LHIGHAKA +N +A + G +R+DDTNP +
Sbjct: 206 GEVCVRFAPEPSGYLHIGHAKAGLLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLKD 265
Query: 329 VEWLGYKPYKITHSSDYFDQLYEWAIQLIKKDLAYVCHQKSEDIKG--FNPPPSPWRIRP 386
VE LG K +T++SDYF QL E A LIK+ AYV E ++ + S R
Sbjct: 266 VETLGIKYDIVTYTSDYFPQLMEMAENLIKQGKAYVDDTPKEQMRSERMDGVESKCRNNT 325
Query: 387 IEESLQLFEDMKNGKIDEGDATLRMKITLEE---GKQDPVAYRIRFKPHHRTGNKWCIYP 443
++++L L+++M NG +R K+ +++ +DPV YR PHHR G+K+ +YP
Sbjct: 326 VQDNLSLWKEMINGTERGMQCCVRGKLDMQDPNKSLRDPVYYRCNTDPHHRIGSKYKVYP 385
Query: 444 TYDYTHCLCDSIEHITHSLCTKEFQSRRAMV--VLEPLKIRIV 484
TYD+ D++E +TH+L + E+ R A +L+ + +R V
Sbjct: 386 TYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILQEMGLRRV 428
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 55.2 bits (127), Expect = 6e-07
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 7/120 (5%)
Query: 807 PVPVPGKTRLELEVLSPTAHSPLLFALPDHTRFTLVDFPLHLPLELLGVDTCLKVLTLII 866
P+P PGK R VL + L P D ++ L VD +++ T ++
Sbjct: 173 PLPTPGKNR----VLFAIENCLLSVEAPPKEWLPHADISFQPLVQCLDVDKLIQLFTAVL 228
Query: 867 LENKIVVQSRDYNALSMSVMALVAMLYPLEYMFPAIPLLPSCMSCAEQLLLAPTPFLIGI 926
LE +I+++S Y L++ A+ ++YPL + IP++ S + APTP+++G+
Sbjct: 229 LERRILLRSNKYTLLTLVSEAICHLIYPLRWQHVYIPII---FSSGVDYIDAPTPYMMGL 285
>02_01_0157 -
1090653-1090886,1091205-1091361,1091538-1091638,
1091786-1091900,1092940-1093003,1093107-1093209,
1093331-1093432,1093542-1093617,1093672-1093790,
1093918-1094100,1094378-1094499,1095605-1095944
Length = 571
Score = 51.6 bits (118), Expect = 7e-06
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 268 GGKVRTRFPPEPNGILHIGHAKAININFGYAAAHDGVCFLRYDDTNPXXXXXXXXIGIKD 327
GG VR RF P P G LH+G A+ N+ +A + G LR +DT+ +
Sbjct: 43 GGPVRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKKSEEAVLS 102
Query: 328 MVEWLG------------YKPYKITHSSDYFDQLYEWAIQLIKKDLAYVCHQKSEDIKGF 375
+ WLG + PY+ + + + Q +A +L++ Y C SE+++
Sbjct: 103 DLAWLGLDWDEGPDVGGEFGPYRQSERNSMYKQ---YAEKLMESGAVYQCFCSSEELEQM 159
Query: 376 NPPPSPWRIRPI 387
++ P+
Sbjct: 160 KETAKQMQLPPV 171
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 39.9 bits (89), Expect = 0.023
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 853 LGVDTCLKVLTLIILENKIVVQSRDYNALSMSVMALVAMLYPLEYMFPAIPLLPSCMSCA 912
L +++ L++ +LE +IVV + LS V++++ M+ P ++ +P+LP +
Sbjct: 736 LSLESVLELFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKL--- 792
Query: 913 EQLLLAPTPFLIGI 926
L AP PF+ G+
Sbjct: 793 VDFLDAPVPFIAGV 806
>11_05_0089 + 18975637-18977439
Length = 600
Score = 37.1 bits (82), Expect = 0.16
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 379 PSPWRIRPIEESLQLFEDMKNGKIDEGDATLRMKITLEEGKQDPVA-YRIRFKP 431
P WR P E+ L FE +G+ D D + ++GK+DP+A YR RF+P
Sbjct: 181 PRRWRTMPPEDIL--FESPSSGEEDHADDEDDDDVLSDDGKKDPMAVYRRRFEP 232
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 36.3 bits (80), Expect = 0.28
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 853 LGVDTCLKVLTLIILENKIVVQSRDYNALSMSVMALVAMLYPLEYMFPAIPLLPSCMSCA 912
L ++ + + +LE +I++ + LS SV++++ ++ P ++ IP+LP+ M
Sbjct: 604 LRLEHVMTLFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMM-- 661
Query: 913 EQLLLAPTPFL 923
L AP P++
Sbjct: 662 -DFLDAPVPYI 671
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 34.3 bits (75), Expect = 1.1
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 551 VSKVIKDPSGKVLELECTAESTDSSEKPKAFIHWVSEPISIEVRLYEPLFKHKNPEDPNE 610
V++ ++D V + +C + E A IH ++ + ++ E +FK KN E
Sbjct: 647 VTEAVQDKKAVVKQTDCVLTEASNEESSSAAIHCDAQDLLPPLKSEELIFKEKNQGVLTE 706
Query: 611 VPGGFL 616
V GG L
Sbjct: 707 VEGGSL 712
>10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 34.3 bits (75), Expect = 1.1
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 958 GNDQDLPPLPEPEGSVLKSHLKQALNSLTNTTAEQASALLMPSRRD--SVGGATLKVQPT 1015
G +D+ +P PE L L++ ++LT ++++ +A P +R S GG + T
Sbjct: 188 GMCRDVDTVPSPELRPLPP-LRRGASALTQGSSDEDAAYYTPGQRSAGSGGGGGGEGGGT 246
Query: 1016 WYKGGAESAPHSAAESRRVSVTGTASA-GHTPQRHSLASPHGAAQPFNP 1063
W + A S+P + SRR + T+ TP + +P AA P P
Sbjct: 247 WSEASA-SSPRTTTASRRSLPSLTSDFFPTTPAAAPVPAPAAAAPPPAP 294
>10_07_0117 +
13028336-13028404,13029073-13029174,13031108-13031367,
13031813-13031882,13031935-13031966,13032736-13032823,
13033431-13033742,13033822-13033896,13034018-13034559,
13034936-13035044,13035713-13035892,13036243-13036404
Length = 666
Score = 33.5 bits (73), Expect = 2.0
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 440 CIYPTYDYTHCLCDSIEHITHSLCTKEFQSRRAMVVLEPLKIRIV-NFPSEQPISIQVPD 498
C DY C+ + + I ++C KEF + R+ + L +IV + P+ P S V D
Sbjct: 20 CASQAKDYGRCIAEKVPEIEQNMCAKEFLALRSCMQTVILYWKIVPSTPAGPPNSDPVND 79
Query: 499 FP 500
P
Sbjct: 80 GP 81
>07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,
4005201-4005446,4005550-4005648,4005912-4006097,
4006204-4006401,4006521-4006596,4006721-4007637
Length = 891
Score = 31.9 bits (69), Expect = 6.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 1012 VQPTWYKGGAESAPHSAAESRRVSVTGTASAGHTPQR 1048
+ P + G +S+P S++ R S T ASA TPQR
Sbjct: 727 IVPVPLRDGVDSSPSSSSRRGRTSSTSAASARSTPQR 763
>05_07_0323 + 29260608-29260836,29262242-29262513,29263349-29263487,
29263581-29263714,29263847-29263970,29264364-29264773
Length = 435
Score = 31.9 bits (69), Expect = 6.0
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 1009 TLKVQPTWYKGGAESAPHSAAESRRVSVTGTASAGHTPQRHSLASPHGAAQPFNPLIYGN 1068
TL+ T + A ++ +S ++S+ S + S +P R S +SP+GA P+ + G
Sbjct: 365 TLETLHTDQRANATTS-YSYSQSQPPSPSANPSPSRSPMRSSASSPYGAPYPYGGI--GG 421
Query: 1069 DVDSVDVATRVAMA 1082
+ TR AMA
Sbjct: 422 HASPLRHGTRRAMA 435
>01_06_1273 +
35896320-35896400,35896548-35896736,35897817-35897948,
35898093-35898242,35898564-35898719,35899462-35899596,
35899706-35899771,35900016-35900122,35900258-35900357,
35900436-35900527,35901026-35901095,35901229-35901318
Length = 455
Score = 31.5 bits (68), Expect = 7.9
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 878 YNALSMSVMALVAMLYPLEYMFPAIPLLPSCMSCAEQLLLAPTPFLIGIPATFLTYKKHF 937
Y+AL +A+ ++Y +E A+ + C S A + L + + IP + KK
Sbjct: 177 YDALIKEKVAVGDVIY-IEANSGAVKRVGRCDSFATEYDLEAEEY-VPIPKGEVHKKK-- 232
Query: 938 KLPDDIWLVDLDATKLISPTGND--QDLPPLPEPEGSVLKSHLKQALNSLTNTTAEQASA 995
++ D+ L DLDA G D + + +P + + L+Q +N + N ++ A
Sbjct: 233 EIVQDVTLHDLDAANAQPQGGQDILSLMGQMMKPRKTEITDKLRQEINKVVNRYIDEGIA 292
Query: 996 LLMP 999
L+P
Sbjct: 293 ELVP 296
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,397,071
Number of Sequences: 37544
Number of extensions: 2502597
Number of successful extensions: 5996
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 5955
Number of HSP's gapped (non-prelim): 28
length of query: 2195
length of database: 14,793,348
effective HSP length: 94
effective length of query: 2101
effective length of database: 11,264,212
effective search space: 23666109412
effective search space used: 23666109412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 68 (31.5 bits)
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