Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001193-TA|BGIBMGA001193-PA|undefined
         (234 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   1.5  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   3.6  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 169 HPTPFRPLSLPPAPDSSCP 187
           H  P RP++LPP  +   P
Sbjct: 62  HKAPIRPVALPPKREIPSP 80


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 72  INNNGVEDWVSLLSFSYTTLRIPDRGDPRSLTAKV 106
           IN N  +   S  S   +T R+P  G     T+K+
Sbjct: 16  INGNSGDSTSSATSIDLSTFRVPTYGTTSHPTSKL 50


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 72  INNNGVEDWVSLLSFSYTTLRIPDRGDPRSLTAKV 106
           IN N  +   S  S   +T R+P  G     T+K+
Sbjct: 16  INGNSGDSTSSATSIDLSTFRVPTYGTTSHPTSKL 50


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,396
Number of Sequences: 317
Number of extensions: 2500
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 234
length of database: 114,650
effective HSP length: 55
effective length of query: 179
effective length of database: 97,215
effective search space: 17401485
effective search space used: 17401485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)