Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001193-TA|BGIBMGA001193-PA|undefined
         (234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    30   0.33 
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    28   1.0  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   1.8  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   4.1  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   5.4  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    26   5.4  

>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 101 SLTAKVKENANNNSPYFLEDFKHKPRSIVKRIEAKVHEGDLRGA-VRLLVSEDSLAPFND 159
           S +  V    N N P+ L  F   PR I   +  K+ +  L+GA + +L  + + +P   
Sbjct: 105 SSSGNVGLGPNTNQPFPLNPFFKPPRPISHSLRMKITDEYLQGASIEVLARKFNTSPQRI 164

Query: 160 ETLSALR 166
           E L  LR
Sbjct: 165 EALIKLR 171


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 73  NNNGVEDWVSLLSFSYTTLRIPDRGDPRSLTAKVKENANNNSPYFLEDFKHKPRSIVKRI 132
           + +G+  W+ + SF++        G+P+++T     NA   SPY         RSI + I
Sbjct: 40  SQSGIIPWIQVESFNFQGCEGAVFGNPKAITTSALFNALLQSPYLAALANEFNRSIKEGI 99


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 2   PSLSGFNSL--FVVPRGLNVHISHDAHPQAQSVIHTLDDLASYKNKIPVLKHIPKGARNL 59
           P  SG   L   V   GL+V  +H+     +      D  A+Y+  + VLKH+ K   +L
Sbjct: 208 PDFSGRMDLVEIVAKSGLDV-FAHNVETVEELTPFVRDRRATYRQSLSVLKHVKKTCPHL 266

Query: 60  V 60
           +
Sbjct: 267 I 267


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 202 SFYSGSAPGLDVPQGQHALIVRVPHA 227
           + Y G+ PGL  P  QHA I+ V ++
Sbjct: 10  TIYPGAHPGLLTPDHQHAAILSVQNS 35


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 72  INNNGVEDWVSLLSFSYTTLRIPDRGDPRSLTAKVKENANNNSPY 116
           IN   ++D+    S  Y T+ + DR +P  +   ++   N  SP+
Sbjct: 309 INEEALDDFAGSAS-PYKTMSLTDRAEPIVMNGHMRSLHNATSPF 352


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 28  QAQSVIHTLDDLASYKNKIPVLKHIPKGARNLVAGKL 64
           + QSVI T+ D   Y   +P+ K I +    L+ G++
Sbjct: 295 EVQSVIRTVSDKILYDKAVPLEKRINRANALLMIGQV 331


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,159,010
Number of Sequences: 5004
Number of extensions: 50619
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 6
length of query: 234
length of database: 2,362,478
effective HSP length: 71
effective length of query: 163
effective length of database: 2,007,194
effective search space: 327172622
effective search space used: 327172622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)