GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001193-TA|BGIBMGA001193-PA|undefined
         (234 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23639| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.009
SB_57622| Best HMM Match : SpoU_sub_bind (HMM E-Value=0.89)            38   0.009
SB_6071| Best HMM Match : SpoU_sub_bind (HMM E-Value=1.7)              34   0.12 
SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)                   30   1.4  
SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)          28   5.8  
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_48549| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)               28   7.6  
SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_23639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 117 FLEDFKHKPRSIVKRIEAK-VHEGDLRGAVRLLVSEDS--LAPFNDETLSALRDKHPTP 172
           F+   K K    + R  AK V +G L  A+++L  E+S  L   +DE LS L++KHP+P
Sbjct: 43  FVNSKKAKLAEDISRTFAKLVFQGKLTPAIKMLYKENSSGLLNLSDEGLSQLKEKHPSP 101


>SB_57622| Best HMM Match : SpoU_sub_bind (HMM E-Value=0.89)
          Length = 277

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 117 FLEDFKHKPRSIVKRIEAK-VHEGDLRGAVRLLVSEDS--LAPFNDETLSALRDKHPTP 172
           F+   K K    + R  AK V +G L  A+++L  E+S  L   +DE LS L++KHP+P
Sbjct: 11  FVNSKKAKLAEDISRTFAKLVFQGKLTPAIKMLYKENSSGLLNLSDEGLSQLKEKHPSP 69


>SB_6071| Best HMM Match : SpoU_sub_bind (HMM E-Value=1.7)
          Length = 431

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 117 FLEDFKHKPRSIVKRIEAK-VHEGDLRGAVRLLVSEDS--LAPFNDETLSALRDKHPTP 172
           F+   + K    + R  AK V +G L  A+++L  E+S  L   +DE LS L++K+P+P
Sbjct: 29  FVNSKEAKSAKDISRTFAKLVIQGKLTAAIKMLNKENSSGLLNLSDEVLSQLKEKNPSP 87


>SB_43343| Best HMM Match : fn3 (HMM E-Value=3.4e-39)
          Length = 2865

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/45 (35%), Positives = 23/45 (51%)

Query: 158  NDETLSALRDKHPTPFRPLSLPPAPDSSCPFLTVNSEDVADAISS 202
            N + +S + ++H TP    S PP+  SS     VNS    DA+ S
Sbjct: 2404 NRQQVSRIIERHITPLEKPSEPPSISSSSDVTNVNSAFYRDAVLS 2448


>SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 172 PFRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGLD 212
           PF+ L   P PD     +TV+   V  A+S  + G A G D
Sbjct: 456 PFKRLESLPIPDKVTVSMTVSEPAVLTALSDLHPGKAAGPD 496


>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2851

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 104  AKVKENANNNSPYFLEDFKHKPRSIVKRIEAKVHEGDLR-GAVRLLVSEDSLAPFNDETL 162
            AK K+N    +P F +  +H+  S     + K   G +  G    +V   S+      T 
Sbjct: 1611 AKFKKNQPGKAPRFTK--QHQSTSPTPTSQPKQAAGKIPVGVDTAIVPPGSVGSNASSTS 1668

Query: 163  SALRDKHPTPFRPLSLPPAP 182
            S  R+   T  RPLS PP P
Sbjct: 1669 STKRNSPITVERPLSPPPPP 1688


>SB_46110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 984

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 125 PRSIVKRIEAKVHEGDLRGAVRLLVSEDS--LAPFNDETLSALRDKHP 170
           P++  K     + EG +  A+  L  +D   + P  ++ ++ L DKHP
Sbjct: 296 PQNKAKVFAKLIMEGQVNSALHFLSDDDGGGVLPLTEDVMNQLHDKHP 343


>SB_45190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 581

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 42  YKNKIPVLKHIPKGARNLVAGKLRVIVDGCINNNGVEDWV--SLLSFSYTTLRIPDRGDP 99
           + ++ P+L   PK AR+L   + + I  GC N NG    V  + L F+  TL    R D 
Sbjct: 132 FTSEEPILTP-PKEARSLNPDEQKKIRFGCWNLNGFNSRVVGNKLKFN-DTLSTIKRHD- 188

Query: 100 RSLTAKVKENANNNSPYFLEDFKH 123
             +   V+ +AN NS   + ++KH
Sbjct: 189 --IFGIVETHANQNSDLKINNYKH 210


>SB_35533| Best HMM Match : Ldl_recept_b (HMM E-Value=9.8e-05)
          Length = 909

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/59 (23%), Positives = 26/59 (44%)

Query: 2   PSLSGFNSLFVVPRGLNVHISHDAHPQAQSVIHTLDDLASYKNKIPVLKHIPKGARNLV 60
           P  S     + + +  N  I+H  H      +   +  A+  N++P + H  K A++LV
Sbjct: 562 PDCSDVYQSYDLSKNFNETIAHAIHSMTVQGLRLFNPRANPDNRVPTVNHDIKDAKHLV 620


>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 173 FRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGLD 212
           F PL  PPA       LTV+   V  A++   S  A G D
Sbjct: 364 FLPLQAPPAYAEDSTVLTVSESTVLSALAKLNSRKAAGPD 403


>SB_48549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/51 (29%), Positives = 25/51 (49%)

Query: 151 EDSLAPFNDETLSALRDKHPTPFRPLSLPPAPDSSCPFLTVNSEDVADAIS 201
           EDS+    +E   +++ ++P       LP A DSS    +V  +  AD +S
Sbjct: 115 EDSVGQVQEERNESIQTENPAAVVTEILPSASDSSSATTSVAMQQQADTVS 165


>SB_14918| Best HMM Match : Extensin_2 (HMM E-Value=0.35)
          Length = 1242

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/56 (25%), Positives = 24/56 (42%)

Query: 171 TPFRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGLDVPQGQHALIVRVPH 226
           TP+    L    +++ P +T+   +    + S +S     +  P G  AL V  PH
Sbjct: 84  TPYSGSDLSSPDENNGPQITLPHSNTISGVPSHHSYPGSAMTPPHGHTALTVTSPH 139


>SB_10223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 945

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 3/31 (9%)

Query: 57  RNLVAGKLRVIV---DGCINNNGVEDWVSLL 84
           R++V G L V+V    GC+N++G++D V ++
Sbjct: 770 RHMVTGPLLVLVIIMGGCVNDDGIDDGVVIV 800


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,387,545
Number of Sequences: 59808
Number of extensions: 356255
Number of successful extensions: 933
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 926
Number of HSP's gapped (non-prelim): 14
length of query: 234
length of database: 16,821,457
effective HSP length: 80
effective length of query: 154
effective length of database: 12,036,817
effective search space: 1853669818
effective search space used: 1853669818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)