GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001193-TA|BGIBMGA001193-PA|undefined
         (234 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015312-1|AAT94540.1| 1157|Drosophila melanogaster AT04807p pro...    29   4.2  
AE014297-2039|AAF55194.3| 1559|Drosophila melanogaster CG31302-P...    29   4.2  
AE014297-2960|AAF55869.3| 1251|Drosophila melanogaster CG5874-PA...    29   7.3  
AE014297-2090|AAF55232.1|  400|Drosophila melanogaster CG14876-P...    29   7.3  
AY128442-1|AAM75035.1| 1261|Drosophila melanogaster LD17208p pro...    28   9.6  
AE013599-1809|AAM68567.2| 1251|Drosophila melanogaster CG6701-PA...    28   9.6  

>BT015312-1|AAT94540.1| 1157|Drosophila melanogaster AT04807p
           protein.
          Length = 1157

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 178 LPPAPDSSCPFLTVNSEDVADAISSFYSGSAPG 210
           +PP P ++ P L++NS ++  A S+ YS    G
Sbjct: 23  IPPLPSTTMPLLSLNSHNLPPAGSTSYSALGAG 55


>AE014297-2039|AAF55194.3| 1559|Drosophila melanogaster CG31302-PB,
           isoform B protein.
          Length = 1559

 Score = 29.5 bits (63), Expect = 4.2
 Identities = 12/33 (36%), Positives = 20/33 (60%)

Query: 178 LPPAPDSSCPFLTVNSEDVADAISSFYSGSAPG 210
           +PP P ++ P L++NS ++  A S+ YS    G
Sbjct: 148 IPPLPSTTMPLLSLNSHNLPPAGSTSYSALGAG 180


>AE014297-2960|AAF55869.3| 1251|Drosophila melanogaster CG5874-PA
           protein.
          Length = 1251

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 99  PRSLTAKVKENANNNSPYFLEDFKHKPRSIVKRIEAKVHEGDLRGAVRLLVSEDS 153
           P+S  AK+  N NNN+      F H P+ I + IE K  E  +  +++L   E S
Sbjct: 410 PKS-AAKLNNNNNNNNN---NSFNHTPKRIKQEIEIKSEEIIVPASIKLEKIETS 460


>AE014297-2090|AAF55232.1|  400|Drosophila melanogaster CG14876-PA
           protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 89  TTLRIPDRGDPRSLTAKVKENANNNSPYFLEDFKHKPRSIVKRIEAKVHEGDLRGAVRLL 148
           T    P   DP+ + AK  EN        +ED KHK     K IEAK  E  +  A ++ 
Sbjct: 234 TETEAPCIKDPKEIEAKPAENMEIIHKTIVEDKKHKD---PKEIEAKPAEA-MESAAKMF 289

Query: 149 VSE 151
           V +
Sbjct: 290 VKD 292


>AY128442-1|AAM75035.1| 1261|Drosophila melanogaster LD17208p
           protein.
          Length = 1261

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 83  LLSFSYTTLRIPDRGDPRSLTAKVKENANNNSPYFLEDF 121
           +LS     L I ++G+P+S   K+ EN NN     L+DF
Sbjct: 395 ILSPGDDVLIINEKGNPKSAVRKMLENNNNVLELALKDF 433


>AE013599-1809|AAM68567.2| 1251|Drosophila melanogaster CG6701-PA
           protein.
          Length = 1251

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 83  LLSFSYTTLRIPDRGDPRSLTAKVKENANNNSPYFLEDF 121
           +LS     L I ++G+P+S   K+ EN NN     L+DF
Sbjct: 385 ILSPGDDVLIINEKGNPKSAVRKMLENNNNVLELALKDF 423


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,343,767
Number of Sequences: 52641
Number of extensions: 536450
Number of successful extensions: 1365
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1360
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 24,830,863
effective HSP length: 83
effective length of query: 151
effective length of database: 20,461,660
effective search space: 3089710660
effective search space used: 3089710660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)