GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001193-TA|BGIBMGA001193-PA|undefined
         (234 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.79 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   5.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.8  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 5/43 (11%)

Query: 87  SYTTLRIPDRG---DPRSLTAKVKENANN--NSPYFLEDFKHK 124
           +Y  L+ P  G   +PR      KE   N   + YFL D+KHK
Sbjct: 632 TYILLKYPISGFDLEPRQKEFLPKEFPANIEGTSYFLNDYKHK 674


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 171 TPFRPLSLPPAPDSSCP 187
           TP +P   PP P SS P
Sbjct: 337 TPPKPAPPPPPPSSSGP 353


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 63  KLRVIVDGCINNNGVEDWVSLLSF---SYTTLRIPDRGDP 99
           KLR+++ G INN   +    LL+F   S++   I D   P
Sbjct: 61  KLRLLLQGNINNQLFQTPCELLNFPKRSFSENMINDHRQP 100


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 75  NGVEDWVSLLSFSYTTLRIP 94
           NG+++    L FSY  +R P
Sbjct: 98  NGLDNLHEYLKFSYPRMRAP 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,416
Number of Sequences: 429
Number of extensions: 3114
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 140,377
effective HSP length: 56
effective length of query: 178
effective length of database: 116,353
effective search space: 20710834
effective search space used: 20710834
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)