GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001193-TA|BGIBMGA001193-PA|undefined
         (234 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25830.1 68418.m03065 zinc finger (GATA type) family protein ...    32   0.29 
At2g40820.1 68415.m05038 proline-rich family protein contains pr...    31   0.51 
At5g25500.1 68418.m03034 expressed protein ; expression supporte...    30   1.5  
At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersico...    29   3.6  
At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersico...    29   3.6  
At2g09840.1 68415.m01018 hypothetical protein                          28   4.7  
At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY...    28   6.2  
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-...    27   8.3  
At1g67740.1 68414.m07730 photosystem II core complex proteins ps...    27   8.3  
At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / proly...    27   8.3  

>At5g25830.1 68418.m03065 zinc finger (GATA type) family protein
           GATA transcription factor, Arabidopsis thaliana,
           PIR:T05288
          Length = 331

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 96  RGDPRSLTAKVKENANNNSPYFLEDFKHKPRSIVKRIEAKVHEGDLRGAVRLLVSEDSLA 155
           R DP+S T    EN N++SP F  D     ++  KR  A       RG ++    +   +
Sbjct: 110 RPDPKSDTGS-PENPNSSSPIFTTDVSVPAKARSKRSRAAACNWASRGLLKETFYD---S 165

Query: 156 PFNDET-LSALRDKHPTPFRPLSLPP 180
           PF  ET LS+ +   P    PL + P
Sbjct: 166 PFTGETILSSQQHLSPPTSPPLLMAP 191


>At2g40820.1 68415.m05038 proline-rich family protein contains
           proline rich extensin domains, INTERPRO:IPR002965
          Length = 903

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 156 PFNDETLSALRDKHPTPFRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPG 210
           P N+      +  +P P +P   PP      P    NSE+V +  SS  SG  PG
Sbjct: 793 PMNNTNPQMQQPYYPPPMQPAP-PPMNSGYMPTYIPNSENVTNIPSSSSSGGVPG 846


>At5g25500.1 68418.m03034 expressed protein ; expression supported
           by MPSS
          Length = 420

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 8/102 (7%)

Query: 26  HPQAQSVIHTLDDLASYKNKIPVLKHIPKGAR--NLVAGKLRVIVDGCINNNGVEDWVSL 83
           HP   S    L     Y+ K+PVLK + +  R  +LV GKL  I    + ++G+   +  
Sbjct: 35  HPSVDSYEDVLPH-EWYETKLPVLKKLNRALRDVDLVDGKLEDINGVIVYDDGITKKMQ- 92

Query: 84  LSFSYTTLRIPDRGDPRSLTAKVKENANNNSPYFLEDFKHKP 125
              ++ +L     G P S+  K++E      P+F  + + +P
Sbjct: 93  ---AFKSLARIFIGSP-SIQQKLREEGRFKFPFFGSESEREP 130


>At4g38900.2 68417.m05511 bZIP protein vsf-1 protein, Lycopersicon
           esculentum, PIR2:S52203
          Length = 547

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 153 SLAPFNDETLSALRDKHPTPFRPL-SLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGL 211
           S +PF D  +S + D+    F    SLPP+P + C   + +S  V +++    S      
Sbjct: 116 SPSPFRDHDVS-MEDRDSGVFNSNHSLPPSPFTRCNSTSSSSLRVGESLPPRKSHRRSNS 174

Query: 212 DVPQGQHAL 220
           D+P G +++
Sbjct: 175 DIPSGFNSM 183


>At4g38900.1 68417.m05510 bZIP protein vsf-1 protein, Lycopersicon
           esculentum, PIR2:S52203
          Length = 553

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 153 SLAPFNDETLSALRDKHPTPFRPL-SLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGL 211
           S +PF D  +S + D+    F    SLPP+P + C   + +S  V +++    S      
Sbjct: 116 SPSPFRDHDVS-MEDRDSGVFNSNHSLPPSPFTRCNSTSSSSLRVGESLPPRKSHRRSNS 174

Query: 212 DVPQGQHAL 220
           D+P G +++
Sbjct: 175 DIPSGFNSM 183


>At2g09840.1 68415.m01018 hypothetical protein
          Length = 163

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 167 DKHPTPFRPLSLPPAPDSS--------CPFLTVNSEDVADAISSFYSGSAPGLDVP 214
           D   +P+ P ++  +PDS          P L   +E  ADAI +F  GS  G+ +P
Sbjct: 67  DPPVSPYVPEAIDHSPDSPFALLWEGMSPILCFTAEMRADAILTFDGGSTSGIQIP 122


>At4g11740.1 68417.m01872 ara4-interacting protein, putative (SAY1)
           similar to Ara4-interacting protein [Arabidopsis
           thaliana] GI:13160609; contains Pfam profiles PF00789:
           UBX domain, PF02809: Ubiquitin interaction motif
          Length = 564

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 137 HEGDLRGAVRLLVSEDSL-----APFNDETLSALRDKHPTPFRPLSL 178
           H GDL  AV    SE        AP ND+    + D  P P  PLS+
Sbjct: 30  HRGDLNQAVNAYFSEGDRNVVREAPVNDDDEMDIDDVIPAPQSPLSM 76


>At5g53170.1 68418.m06610 FtsH protease, putative similar to
           ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
           musculus]
          Length = 806

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 122 KHKPRSIVKRIEAKVHEGDLRGA---VRLLVSEDSLAPF 157
           KH P ++V+R E + H  D RG    +R LV  ++++ +
Sbjct: 202 KHIPEAVVQRFEQREHTVDSRGVAEYIRALVITNAISEY 240


>At1g67740.1 68414.m07730 photosystem II core complex proteins psbY,
           chloroplast (PSBY) / L-arginine metabolising enzyme
           identical to SP:O49347 Photosystem II core complex
           proteins psbY, chloroplast precursor (L-arginine
           metabolising enzyme) (L-AME) [Contains: Photosystem II
           protein psbY-1 (psbY-A1); Photosystem II protein psbY-2
           (psbY-A2)] [Arabidopsis thaliana]
          Length = 189

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 172 PFRPLSLPPAPDSSCPFLTVNSEDVADAISSFYSGSAPGLDVPQ 215
           PF  L  PP P+ S   L V S  +A A+ S  S S P L + Q
Sbjct: 29  PFISLPTPPKPNVS---LAVTSTALAGAVFSSLSYSEPALAIQQ 69


>At1g20380.1 68414.m02542 prolyl oligopeptidase, putative / prolyl
           endopeptidase, putative / post-proline cleaving enzyme,
           putative similar to SP|P48147 Prolyl endopeptidase (EC
           3.4.21.26) (Post-proline cleaving enzyme) {Homo
           sapiens}; contains Pfam profiles PF00326: prolyl
           oligopeptidase family, PF02897: Prolyl oligopeptidase,
           N-terminal beta-propeller domain
          Length = 731

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 15  RGLNVHISHDAHPQAQSVIHTLDDLAS 41
           RG +    H++  QAQSV+H  DDL S
Sbjct: 89  RGNSYFYFHNSGLQAQSVLHVQDDLES 115


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,934,969
Number of Sequences: 28952
Number of extensions: 257440
Number of successful extensions: 728
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 10
length of query: 234
length of database: 12,070,560
effective HSP length: 79
effective length of query: 155
effective length of database: 9,783,352
effective search space: 1516419560
effective search space used: 1516419560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)