GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   1.0  
SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar...    26   3.2  
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    26   3.2  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.6  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    24   9.7  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  

>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 121 SKISEHDLMTSVRKMGKLVEKQYEV 145
           ++I+E  +MT V K   LV K YE+
Sbjct: 378 NEINEEGIMTEVSKYASLVNKNYEI 402


>SPAC23C4.09c |||DNA-binding TFAR19-related
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 119 LSSKISEHDLMTSVRKMGKLVEKQYEVKVVL 149
           +S KISE +L+  + K+   V K+ E K+V+
Sbjct: 88  ISHKISEPELIELLEKISGEVSKRNETKIVI 118


>SPBC106.16 |||20S proteasome component alpha
          4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 259

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 22 IINAEGKNVPKRKNFENRITLIGTDNSVSI 51
          +I  E KNVPK +N  N   +   DN V +
Sbjct: 43 VIGVERKNVPKLQNVSNFQKIAMVDNHVCL 72


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 14  LEYRPVTTIINAEGKNVPKRKNFENRITLIGTDNSVSIIDLKNAQNLSVKR 64
           L Y+P+    +A       +K+F+ +I++ G    V++++ K    L +K+
Sbjct: 259 LRYKPLMVANSASMAAAAAKKHFDEQISIYGDQVVVNLVNCK-GHELPIKQ 308


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 107 QNSSVKGQKLMILSSKISEHDLMTSVRKMGKLVEK 141
           + +++ G K+ +L SKI    +   +R +G+L+EK
Sbjct: 140 ERATLTGMKIDVLFSKIRLAYVYADMRVVGQLLEK 174


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 107 QNSSVKGQK--LMILSSKISEHDLMTSVRKMGKLVEKQ 142
           + SS+K +K  ++I     S+ DL+ SV  + KL EK+
Sbjct: 24  EESSLKIEKFRVLIFGKDNSQDDLVKSVFNLSKLSEKE 61


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,543
Number of Sequences: 5004
Number of extensions: 17046
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 2,362,478
effective HSP length: 68
effective length of query: 95
effective length of database: 2,022,206
effective search space: 192109570
effective search space used: 192109570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 50 (24.2 bits)