GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0033 + 12567208-12567642                                         27   5.6  
09_01_0093 - 1360596-1360625,1363562-1364266                           27   7.4  
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63...    27   7.4  
04_03_0082 - 10873913-10873977,10874016-10874583                       27   7.4  
04_01_0122 + 1267048-1267149,1267764-1267855,1268137-1268234,126...    27   7.4  
10_07_0044 + 12319382-12319532,12319978-12320163,12320247-123203...    27   9.7  
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116...    27   9.7  

>11_04_0033 + 12567208-12567642
          Length = 144

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 110 SVKGQKLMILSSKISEHDLMTSVRKMGKLVEKQYEVKVVLAGEGGQSS 157
           S++ +K      K ++   M S  +  + V ++Y+VKVV A E G SS
Sbjct: 43  SLEQKKDFEFMMKSAQEQFMKSFAETRRKVYQKYKVKVVAADEVGSSS 90


>09_01_0093 - 1360596-1360625,1363562-1364266
          Length = 244

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 119 LSSKISEHDLMTS--VRKMGKLVEKQYEVKVVLAGEGGQSS 157
           L  K ++   M S    + GK+++K Y+VKVV A E G SS
Sbjct: 62  LMMKSAQEQFMKSFAATRQGKVIQK-YKVKVVAADEVGTSS 101


>08_01_0087 +
           630355-630403,630502-630699,631858-631943,632238-632946,
           633029-633194,633459-633934,634023-634873,635078-635987,
           636597-636784
          Length = 1210

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 4   YAVLFNLKKILEYR----PVTTIINAEGKNVPKRKNFENRITLIGTDNS 48
           Y V  NL   L+ R    PVTT + A      +R+ FE  +T+ G D +
Sbjct: 464 YRVTLNLDHRLDQRRYNVPVTTEVAAVWVEGNERRKFEPSVTIYGNDRT 512


>04_03_0082 - 10873913-10873977,10874016-10874583
          Length = 210

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 119 LSSKISEHDLMTS-VRKMGKLVEKQYEVKVVLAGEGGQSS 157
           L  K ++   M S V   GK+ +K Y+VKVV A E G SS
Sbjct: 52  LMMKSAQEQFMKSFVETRGKVYQK-YKVKVVTADEVGSSS 90


>04_01_0122 +
           1267048-1267149,1267764-1267855,1268137-1268234,
           1268333-1268488,1268736-1269355,1269480-1269547,
           1269848-1270099,1270390-1270525,1271054-1271246,
           1271386-1271939
          Length = 756

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 14  LEYRPVTTIINAEGKNVPKRKNFENRITLIGTDNS 48
           + YR    IIN E  N+PK K    + T++G++NS
Sbjct: 454 ISYRIRQYIINNENGNIPKAKISLTK-TMVGSENS 487


>10_07_0044 +
           12319382-12319532,12319978-12320163,12320247-12320396,
           12320495-12320644,12320728-12321417,12321641-12322033,
           12322073-12322546,12322634-12323974,12324042-12324388
          Length = 1293

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 4   YAVLFNLKKILEYR----PVTTIINAEGKNVPKRKNFENRITLIGTD 46
           Y V  NL   L+ R    PVTT + A      +R+ FE  +T+ G D
Sbjct: 634 YRVTLNLDHRLDQRRYNVPVTTEVAAVWVEGNERRKFEPSVTIYGND 680


>03_01_0146 -
           1161005-1161133,1161239-1161283,1161369-1161469,
           1161585-1161691,1161823-1161924,1162028-1162250,
           1162343-1162382
          Length = 248

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 33  RKNFENRITLIGTDNSVSIIDLKNAQNL 60
           RK F NR  L+G D++ + ID+ +  N+
Sbjct: 116 RKRFSNRSDLLGPDDNHAKIDVSSIANM 143


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,816
Number of Sequences: 37544
Number of extensions: 83431
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 7
length of query: 163
length of database: 14,793,348
effective HSP length: 77
effective length of query: 86
effective length of database: 11,902,460
effective search space: 1023611560
effective search space used: 1023611560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)