GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_53106| Best HMM Match : PLAT (HMM E-Value=0)                        27   10.0 

>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 115  KLMILSSKISEHDLMTSVRKMGKLVEKQ-YEVKVVLAGEGGQ 155
            K M   S++ EH+LM S++ + + VEK+ + V+   A + G+
Sbjct: 3707 KGMTAGSQLREHELMASLQMLLEKVEKEGFGVQAAHAAQAGR 3748


>SB_53106| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1790

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)

Query: 125 EHDLMTSVRKMGKLVEKQYEVKVVLAGEGGQSSQVLVR 162
           E DL   + K+G++++    V + L G+ G+S ++ V+
Sbjct: 434 EVDLQPVLMKLGEVLDPHAPVHIQLLGDEGESGKIQVK 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,709,595
Number of Sequences: 59808
Number of extensions: 107376
Number of successful extensions: 203
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 16,821,457
effective HSP length: 77
effective length of query: 86
effective length of database: 12,216,241
effective search space: 1050596726
effective search space used: 1050596726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)