GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translati...    27   0.29 
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   4.8  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   4.8  

>AJ439060-9|CAD27760.1|  348|Anopheles gambiae putative translation
           initiation factor protein.
          Length = 348

 Score = 27.1 bits (57), Expect = 0.29
 Identities = 12/25 (48%), Positives = 16/25 (64%)

Query: 137 KLVEKQYEVKVVLAGEGGQSSQVLV 161
           ++ +KQYE K  LA E G+  Q LV
Sbjct: 62  EIYDKQYETKAALANEIGEHLQYLV 86


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 23   INAEGKNVPKRKNFENRITLIGTDNSVS 50
            ++ +GK    R +++NR  LIG  N+ +
Sbjct: 2036 VSVKGKRFRLRYSYDNRGKLIGISNAAT 2063


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 4.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 23   INAEGKNVPKRKNFENRITLIGTDNSVS 50
            ++ +GK    R +++NR  LIG  N+ +
Sbjct: 2037 VSVKGKRFRLRYSYDNRGKLIGISNAAT 2064


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,123
Number of Sequences: 2123
Number of extensions: 2900
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 163
length of database: 516,269
effective HSP length: 59
effective length of query: 104
effective length of database: 391,012
effective search space: 40665248
effective search space used: 40665248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)