GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC046166-1|AAH46166.1|  278|Homo sapiens mitochondrial translati...    31   1.9  
BC039599-1|AAH39599.1|  262|Homo sapiens MTIF3 protein protein.        31   1.9  
AL137059-1|CAH70316.1|  278|Homo sapiens mitochondrial translati...    31   1.9  
AF410851-1|AAL04150.1|  278|Homo sapiens mitochondrial translati...    31   1.9  
AF265440-1|AAG44698.1|  278|Homo sapiens DC38 protein.                 31   1.9  

>BC046166-1|AAH46166.1|  278|Homo sapiens mitochondrial
           translational initiation factor 3 protein.
          Length = 278

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 26/36 (72%)

Query: 114 QKLMILSSKISEHDLMTSVRKMGKLVEKQYEVKVVL 149
           +K +ILSS I +HDL T  +++ + ++K++ V++ +
Sbjct: 158 RKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITI 193


>BC039599-1|AAH39599.1|  262|Homo sapiens MTIF3 protein protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 26/36 (72%)

Query: 114 QKLMILSSKISEHDLMTSVRKMGKLVEKQYEVKVVL 149
           +K +ILSS I +HDL T  +++ + ++K++ V++ +
Sbjct: 158 RKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITI 193


>AL137059-1|CAH70316.1|  278|Homo sapiens mitochondrial
           translational initiation factor 3 protein.
          Length = 278

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 26/36 (72%)

Query: 114 QKLMILSSKISEHDLMTSVRKMGKLVEKQYEVKVVL 149
           +K +ILSS I +HDL T  +++ + ++K++ V++ +
Sbjct: 158 RKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITI 193


>AF410851-1|AAL04150.1|  278|Homo sapiens mitochondrial
           translational initiation factor 3 protein.
          Length = 278

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 26/36 (72%)

Query: 114 QKLMILSSKISEHDLMTSVRKMGKLVEKQYEVKVVL 149
           +K +ILSS I +HDL T  +++ + ++K++ V++ +
Sbjct: 158 RKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITI 193


>AF265440-1|AAG44698.1|  278|Homo sapiens DC38 protein.
          Length = 278

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/36 (33%), Positives = 26/36 (72%)

Query: 114 QKLMILSSKISEHDLMTSVRKMGKLVEKQYEVKVVL 149
           +K +ILSS I +HDL T  +++ + ++K++ V++ +
Sbjct: 158 RKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQITI 193


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,236,835
Number of Sequences: 224733
Number of extensions: 419489
Number of successful extensions: 1017
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 5
length of query: 163
length of database: 73,234,838
effective HSP length: 84
effective length of query: 79
effective length of database: 54,357,266
effective search space: 4294224014
effective search space used: 4294224014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)