GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    27   8.7  

>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 23  INAEGKNVPKRKNFENRITLIGTDNSVSI-IDLKNAQNLSVKR 64
           ++ E   V K K   NR+  +G+D    I ID+ NA  + V +
Sbjct: 197 LSGEETGVVKMKTIRNRVEKVGSDEEQFIEIDIANAPRIYVSK 239


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 114  QKLMILSSKISEH-DLMTSVRKMGKLVEKQYE 144
            Q    L+++++ H D+M SV KMGK++ +  E
Sbjct: 2723 QSFKTLNAELNAHEDVMKSVEKMGKMLAESLE 2754


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 114  QKLMILSSKISEH-DLMTSVRKMGKLVEKQYE 144
            Q    L+++++ H D+M SV KMGK++ +  E
Sbjct: 2723 QSFKTLNAELNAHEDVMKSVEKMGKMLAESLE 2754


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 114  QKLMILSSKISEH-DLMTSVRKMGKLVEKQYE 144
            Q    L+++++ H D+M SV KMGK++ +  E
Sbjct: 2723 QSFKTLNAELNAHEDVMKSVEKMGKMLAESLE 2754


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,663
Number of Sequences: 27539
Number of extensions: 87701
Number of successful extensions: 187
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 4
length of query: 163
length of database: 12,573,161
effective HSP length: 76
effective length of query: 87
effective length of database: 10,480,197
effective search space: 911777139
effective search space used: 911777139
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)