GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   4.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera
          sn-glycerol-3-phosphate dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 20 TTIINAEGKNVPKRKNFENRITL 42
          +TI    G N     NFE+R+T+
Sbjct: 17 STIAKIIGINAANFSNFEDRVTM 39


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
          protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 26 EGKNVPKRKNFENRITLIGTDNSVSIIDLKNAQNL 60
          +G ++  R NF     L+G D +++  D  +  N+
Sbjct: 46 DGYDIRLRPNFGGEPLLVGMDLTIASFDAISEVNM 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,240
Number of Sequences: 429
Number of extensions: 1151
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 163
length of database: 140,377
effective HSP length: 53
effective length of query: 110
effective length of database: 117,640
effective search space: 12940400
effective search space used: 12940400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)