GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001192-TA|BGIBMGA001192-PA|undefined
         (163 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g15200.1 68416.m01921 pentatricopeptide (PPR) repeat-containi...    29   1.5  
At3g44050.1 68416.m04718 kinesin motor protein-related KLP2 prot...    27   8.2  
At1g79670.1 68414.m09291 wall-associated kinase, putative simila...    27   8.2  

>At3g15200.1 68416.m01921 pentatricopeptide (PPR)
          repeat-containing protein contains Pfam profile
          PF01535: PPR repeat
          Length = 523

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 2  NKYAVLFNLKKILEYRPVTTIINAEGKNVPKRKNFENRITL 42
          NK  +LF L+  L  R ++++++      P+  N +N ITL
Sbjct: 5  NKIEILFQLQSALSRRRISSLVDFRRVFPPETPNHKNNITL 45


>At3g44050.1 68416.m04718 kinesin motor protein-related KLP2
           protein, Xenopus laevis, PIR:T30335
          Length = 1229

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 9   NLKKILEYRPVTTI-INAEGKNVPKRKNFENRITLIGTDNSVSIIDLKNAQNLS 61
           N++ I+  RP+++  I+ +G N   R++    IT IG   S    DL   +N+S
Sbjct: 93  NVQVIIRTRPLSSSEISVQGNNKCVRQDNGQAITWIGNPESRFTFDLVADENVS 146


>At1g79670.1 68414.m09291 wall-associated kinase, putative similar
           to wall-associated kinase 4 GI:3355308 from [Arabidopsis
           thaliana]; isoform contains non-consensus AT-acceptor
           splice site.
          Length = 751

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 17  RPVTTI-INAEGKNVPKRKNFENRITLIGTDNSVSIIDLKN 56
           RPV  + +N  GK  P      NR+  +G DN   I D+++
Sbjct: 117 RPVKPLPLNLTGKGSPFFITDSNRLVSVGCDNRALITDIES 157


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.130    0.341 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,634
Number of Sequences: 28952
Number of extensions: 80296
Number of successful extensions: 209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 3
length of query: 163
length of database: 12,070,560
effective HSP length: 76
effective length of query: 87
effective length of database: 9,870,208
effective search space: 858708096
effective search space used: 858708096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 56 (26.6 bits)