Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001190-TA|BGIBMGA001190-PA|undefined
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21080.1 68415.m02502 expressed protein                             31   2.3  
At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein si...    29   7.1  

>At2g21080.1 68415.m02502 expressed protein
          Length = 414

 Score = 31.1 bits (67), Expect = 2.3
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 544 CIGAIISGMVSLQLQSARVTYEALGVVSLLVAAIYLTLYHLLLAPRCAAQAVSP 597
           C    +SG     L +AR+T+ A GVV +       T +H+ L   CA++AVSP
Sbjct: 294 CSAVQLSGFFLCLLGAARITHRAQGVVCI------ATRWHMALT--CASEAVSP 339


>At1g05590.1 68414.m00579 glycosyl hydrolase family 20 protein
           similar to beta-hexosaminidase precursor SP:P43077 from
           [Candida albicans]
          Length = 580

 Score = 29.5 bits (63), Expect = 7.1
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 249 CTPAVRCQVLDPYDEPDGVLADAECRLVIGDPTSSFWAYFILRSIAD--IWPTAA 301
           C P    Q +  YD  DG+L + E +LV+G    + W+     ++ D  +WP A+
Sbjct: 462 CAPFKTWQSIYNYDIADGLLNEEERKLVLGGEV-ALWSEQADSTVLDSRLWPRAS 515


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,474,634
Number of Sequences: 28952
Number of extensions: 587511
Number of successful extensions: 1590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1590
Number of HSP's gapped (non-prelim): 2
length of query: 633
length of database: 12,070,560
effective HSP length: 86
effective length of query: 547
effective length of database: 9,580,688
effective search space: 5240636336
effective search space used: 5240636336
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)