GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001190-TA|BGIBMGA001190-PA|undefined
         (633 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   4.8  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   4.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    23   6.4  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 305 LSTACVIATRETSLG---RGDVGRQIAFGTLGLAIFPPLAGLAADQMPDTPYLVPFI--- 358
           L   CV+ +    LG     D G ++  G   L        L A+++P T   VP I   
Sbjct: 218 LIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTY 277

Query: 359 LHAI-FMILAALIL 371
            + I FM+ ++++L
Sbjct: 278 FNCIMFMVASSVVL 291


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 305 LSTACVIATRETSLG---RGDVGRQIAFGTLGLAIFPPLAGLAADQMPDTPYLVPFI--- 358
           L   CV+ +    LG     D G ++  G   L        L A+++P T   VP I   
Sbjct: 218 LIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAEKIPTTSDAVPLIGTY 277

Query: 359 LHAI-FMILAALIL 371
            + I FM+ ++++L
Sbjct: 278 FNCIMFMVASSVVL 291


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 467 IGHSNVFILAFTFYGLRYTGLASSNEYSLVAVCEILEVFTLSLVWVTAILYF 518
           I H     + FT + L        N + L  +C  L+ FTL L+++  I YF
Sbjct: 166 IYHFFCAFIIFTMHLLFCCAFIFFNMHLLFLLC--LDYFTLHLLFLPCIYYF 215


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 446 LTAGALPAVPALWWAEALVDYIGHSNVFILAFTFYGLRYTGLASSNEYSLVAVCEIL 502
           LT  ++P        +  +  IG+S++ I    F+ +    + S  +Y +  +C IL
Sbjct: 350 LTLNSVPTEIYNLEIQRFIQQIGNSDIAITGKNFFSITRGLILSFVDYFVFLLCSIL 406


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,537
Number of Sequences: 317
Number of extensions: 6204
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 5
length of query: 633
length of database: 114,650
effective HSP length: 61
effective length of query: 572
effective length of database: 95,313
effective search space: 54519036
effective search space used: 54519036
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)