GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001190-TA|BGIBMGA001190-PA|undefined
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    29   2.0  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    29   2.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    28   4.5  
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    27   6.0  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    27   6.0  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    27   7.9  

>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 454 VPALWWAEALVDYIGHSNVFILAFTFYGLRYTGLASS-NEYSL---VAVCEILEVFTLSL 509
           VP  W+   LV+ +G   + +  F   GL +  LA   NE S     A   I ++F+   
Sbjct: 405 VPGYWFNVFLVEILGRKWIQLQGFVITGLMFAILAGRWNEISTGGRFACFVIAQLFSNFG 464

Query: 510 VWVTAILYFRHLIPRKYTTTGQALPVIAHFCLGRCIGAIISGMV 553
              T  +Y   + P +   T   +       LG+C GAI++ ++
Sbjct: 465 PNSTTFIYPAEVFPARVRGTAHGISA----ALGKC-GAILASLL 503


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)

Query: 454 VPALWWAEALVDYIGHSNVFILAFTFYGLRYTGLASS-NEYSL---VAVCEILEVFTLSL 509
           VP  W+   LV+ +G   + +  F   GL +  LA   NE S     A   I ++F+   
Sbjct: 404 VPGYWFNVFLVEILGRKWIQLQGFVITGLMFAILAGRWNEISTGGRFACFVIAQLFSNFG 463

Query: 510 VWVTAILYFRHLIPRKYTTTGQALPVIAHFCLGRCIGAIISGMV 553
              T  +Y   + P +   T   +       LG+C GAI++ ++
Sbjct: 464 PNSTTFIYPAEVFPARVRGTAHGVSA----ALGKC-GAILASLL 502


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 432  VEEMNGTYTEVGLTLTAGALPAVPALWWAEA 462
            +EE  G +  +GLT +   L A+   WW EA
Sbjct: 1738 LEEKLGIHDNIGLTHSLPVLKALVKTWWNEA 1768


>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 366 LAALILVF-DSHMPLSTPEWWWHTATGVLALPMNVVRRYGAETAAVFVVVALLGILWSGI 424
           +  L+ VF  S + +S   W++     +   P    R              +  + WSG 
Sbjct: 409 IGLLVGVFIGSAINISFEPWYYRRCLALGGKPDPEARLPPMMIGCFMFPAGIFWLSWSGY 468

Query: 425 DAYLPWTVEEMNGTYTEVGLTL 446
            +Y+ W V  ++G  T  G+ L
Sbjct: 469 YSYVHWIVPTLSGLATGCGILL 490


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/55 (25%), Positives = 23/55 (41%)

Query: 328 AFGTLGLAIFPPLAGLAADQMPDTPYLVPFILHAIFMILAALILVFDSHMPLSTP 382
           AF   G       AG A   +   P  + F  H + ++    +LV   ++P +TP
Sbjct: 232 AFAYAGTESIALTAGEAKSPITTLPKAIRFTAHRVLLLYIISVLVVGINLPYNTP 286


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 419 ILWSGIDAYLPWTVEEMNGTYTEVGLTL 446
           + WSG   Y+ W V  ++G  T  G+ L
Sbjct: 467 LAWSGYYTYVHWIVPTLSGLLTGAGILL 494


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,114
Number of Sequences: 5004
Number of extensions: 110177
Number of successful extensions: 295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 6
length of query: 633
length of database: 2,362,478
effective HSP length: 77
effective length of query: 556
effective length of database: 1,977,170
effective search space: 1099306520
effective search space used: 1099306520
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)