GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001190-TA|BGIBMGA001190-PA|undefined
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0427 + 18973358-18973364,18974195-18974300,18974763-189748...    32   1.2  
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106           31   3.7  
09_01_0150 - 2244757-2245303,2252925-2253277                           31   3.7  
06_01_0343 + 2471805-2472167                                           30   6.5  
01_06_1472 - 37609732-37609851,37609883-37610104,37610542-376109...    29   8.5  

>12_02_0427 +
           18973358-18973364,18974195-18974300,18974763-18974855,
           18974978-18975173,18975362-18975540,18975882-18976135,
           18976378-18976538,18976633-18976800
          Length = 387

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 7/71 (9%)

Query: 354 LVPFILHAIFMILAAL----ILVFDSHMPLSTPEWWWHTATGVLALPMNVVRRYGAETAA 409
           ++PFILH  FM   A     + V    +  S P +W   A+ +L  P +  +R+G    A
Sbjct: 311 VLPFILHLAFMTFTAFFVMHVQVSTRFLSASPPIYW--AASHILVSPSS-SKRWGNIICA 367

Query: 410 VFVVVALLGIL 420
            F+   LLG L
Sbjct: 368 YFIAYILLGSL 378


>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
          Length = 427

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 5/70 (7%)

Query: 357 FILHAIFMILAALILVFDSH--MPLSTPEWWWHTATGVLALPMNVVRRYGAETAAVFVVV 414
           FI  AI  +LA  +   +    + L+T   +   A G+L  P ++V+  GA++  VF V 
Sbjct: 107 FIFPAIHTVLAQWVPPQERSRSVSLTTSGMYLGAAGGMLFFP-SLVKHMGAQS--VFFVE 163

Query: 415 ALLGILWSGI 424
           A+LG+ WS I
Sbjct: 164 AVLGVAWSVI 173


>09_01_0150 - 2244757-2245303,2252925-2253277
          Length = 299

 Score = 30.7 bits (66), Expect = 3.7
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 334 LAIFPPLAGLAADQMPDTPYLVPFILHAIFMILAALILVFDS-----HMPLSTPEWWWHT 388
           +A+   +AGL A  M    Y VPF+L ++F+++  + LV+ S      + +S  E W H 
Sbjct: 139 VALLVAMAGLLAFLMVKK-YYVPFLLLSLFVLVGFIFLVYFSVLCSFSVVVSVAEPWCHG 197

Query: 389 ATGVLALPMNVVRRYGAETAAVFVVVALLGILWSGI 424
           A G       +V+            +++L  + S +
Sbjct: 198 A-GAFGRAWRLVKEKKRRAVLFVAAISVLAAIVSAV 232


>06_01_0343 + 2471805-2472167
          Length = 120

 Score = 29.9 bits (64), Expect = 6.5
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 394 ALPMNVVRRYGAETAAVFVVVALLGILWSG-IDAYLPWTVE 433
           A P N   R GA+ A V+VV ALL  ++S  + A +PW V+
Sbjct: 55  AAPRNSPARGGAK-AGVWVVTALLAAVFSWRVSALMPWPVD 94


>01_06_1472 -
           37609732-37609851,37609883-37610104,37610542-37610922,
           37612583-37612816,37613589-37613738,37613831-37614016,
           37615058-37615120
          Length = 451

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 476 AFTFYGLRYTGLASSNEYSLVAVCEILEVFTLSLVWVTA 514
           AF    LR+   A +  Y+++AV  +L ++ LSL+++TA
Sbjct: 54  AFVARNLRHQFPAYNAGYAILAVAIVLAIYVLSLLFITA 92


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,633,233
Number of Sequences: 37544
Number of extensions: 778422
Number of successful extensions: 2157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2156
Number of HSP's gapped (non-prelim): 5
length of query: 633
length of database: 14,793,348
effective HSP length: 86
effective length of query: 547
effective length of database: 11,564,564
effective search space: 6325816508
effective search space used: 6325816508
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 63 (29.5 bits)