GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001190-TA|BGIBMGA001190-PA|undefined
         (633 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical ...    51   3e-06
AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical...    39   0.012
AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical ...    31   1.9  
Z67734-5|CAD56227.1|  424|Caenorhabditis elegans Hypothetical pr...    31   2.5  
Z67734-4|CAB54182.1|  410|Caenorhabditis elegans Hypothetical pr...    31   2.5  
AL032678-2|CAC35829.2|  424|Caenorhabditis elegans Hypothetical ...    31   2.5  
AL032678-1|CAB54320.1|  410|Caenorhabditis elegans Hypothetical ...    31   2.5  
Z48638-7|CAA88571.2|  340|Caenorhabditis elegans Hypothetical pr...    30   4.3  
Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical p...    29   7.5  
AC006624-6|AAN84836.1|  355|Caenorhabditis elegans Hypothetical ...    29   7.5  
AC006624-5|AAK68265.1|  418|Caenorhabditis elegans Hypothetical ...    29   7.5  
AC006624-4|AAK68264.1|  420|Caenorhabditis elegans Hypothetical ...    29   7.5  
Z81524-5|CAB04253.2|  283|Caenorhabditis elegans Hypothetical pr...    29   9.9  
AL022289-1|CAA18372.1|  354|Caenorhabditis elegans Hypothetical ...    29   9.9  

>AC006679-8|AAK84470.1|  630|Caenorhabditis elegans Hypothetical
           protein R13A5.9 protein.
          Length = 630

 Score = 50.8 bits (116), Expect = 3e-06
 Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 1/166 (0%)

Query: 411 FVVVALLGILWSGIDAYLPWTVEEMNGTYTEVGLTLTAGALPAVPALWWAEALVDYIGHS 470
           FV V ++G     + ++L W ++++ G+    G+         +   ++   L++  GH 
Sbjct: 389 FVSVVVMGGGAGLVFSFLYWHLQDIGGSPVLFGILSVVNHASEIITYFYVFKLINKYGHV 448

Query: 471 NVFILAFTFYGLRYTGLASSNEYSLVAVCEILEVFTLSLVWVTAILYFRHLIPRKYTTTG 530
            V  L       R+  L+  +   +V   +IL+   L+ VW  A  Y   + P       
Sbjct: 449 RVMYLCLAVNFFRFMALSILDNPWMVLPLQILQGACLATVWSCASSYISLVAPPHAKQHA 508

Query: 531 QALPVIAHFCLGRCIGAIISGMVSLQLQSARVTYEALGVVSLLVAA 576
           Q    + +  +G+ +G+II G V + +   R T+   G++ L   A
Sbjct: 509 QYALQVGYHGIGKGLGSIIGGSV-ISIIGTRTTFVIYGLICLATCA 553


>AC025726-24|AAK73926.2|  447|Caenorhabditis elegans Hypothetical
           protein Y71G12B.25 protein.
          Length = 447

 Score = 38.7 bits (86), Expect = 0.012
 Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 9/178 (5%)

Query: 426 AYLPWTVEEMNGTYTEVGLTLTAGALPAVPALWWAEALVDYIGHSNVFILAFTFYGLRYT 485
           ++L W  EE+  T T++G     G+L        A  L D +G  ++F+L+  F  + Y+
Sbjct: 32  SFLQWDTEEVM-TITDLGYIQAFGSLCNAFGALAAGQLADTLGAQSMFLLSAVFTAIYYS 90

Query: 486 GLASSNEYSLVAVCEILEVFTLSLVWVTAILYFRHLIPRKYTTTG---QALPVIAHFCLG 542
           G++ +  +      +IL  F   L   TA +Y   +      T+      +P       G
Sbjct: 91  GISLARSWYAFFFLQILR-FGYQLDG-TAEMYLATVTTESERTSALMRLTIPQAIAMFFG 148

Query: 543 RCIGAIISGMVSLQLQSARVTYEALGVVSLLVAAIYLTLYHLLLAPRCAAQAVSPPQH 600
             +G+ ++   SL+     V +   G +  +V  +  T + +   PR A+  + P  +
Sbjct: 149 PIVGSKVAAWTSLRTSQFIVGFVLAGTMIPVVMFLLPTTHSI---PRLASARLRPQDY 203


>AL032630-1|CAA21558.1|  366|Caenorhabditis elegans Hypothetical
           protein Y62H9A.1 protein.
          Length = 366

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 459 WAEALVDYIGHSNVFILAFTFYGLRYTGLASSNEYSLVAVCEIL--EVFT--LSLVWVTA 514
           W    ++     NVF+ A T Y +R  G     +Y  V VC ++   VF+  +  V+   
Sbjct: 23  WLRRYMEITSVLNVFLTALTLYLVRVEGKTLKRDYKQVLVCNLMLPVVFSVYMGFVYQPY 82

Query: 515 ILYFRHLI 522
           I++  HL+
Sbjct: 83  IVFPYHLL 90


>Z67734-5|CAD56227.1|  424|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1b protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 392 VLALPMNVVRRYGAETAAVFVVVALLGILWSGIDAYLPWTVEEMNGTYTEVGLTLTAGAL 451
           VLA+ +NVVR   A      VV++LLG L  G +A+ PW VE++         T   G  
Sbjct: 119 VLAIEVNVVRDQSA------VVLSLLGQL--GNNAFKPWDVEDVKHDTLPADATYLTGTT 170

Query: 452 PAVPALWWAEALVDYIGHSN 471
            A   L  A      +G SN
Sbjct: 171 IAFEQLHQAAFRNGGLGLSN 190


>Z67734-4|CAB54182.1|  410|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1a protein.
          Length = 410

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 392 VLALPMNVVRRYGAETAAVFVVVALLGILWSGIDAYLPWTVEEMNGTYTEVGLTLTAGAL 451
           VLA+ +NVVR   A      VV++LLG L  G +A+ PW VE++         T   G  
Sbjct: 105 VLAIEVNVVRDQSA------VVLSLLGQL--GNNAFKPWDVEDVKHDTLPADATYLTGTT 156

Query: 452 PAVPALWWAEALVDYIGHSN 471
            A   L  A      +G SN
Sbjct: 157 IAFEQLHQAAFRNGGLGLSN 176


>AL032678-2|CAC35829.2|  424|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1b protein.
          Length = 424

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 392 VLALPMNVVRRYGAETAAVFVVVALLGILWSGIDAYLPWTVEEMNGTYTEVGLTLTAGAL 451
           VLA+ +NVVR   A      VV++LLG L  G +A+ PW VE++         T   G  
Sbjct: 119 VLAIEVNVVRDQSA------VVLSLLGQL--GNNAFKPWDVEDVKHDTLPADATYLTGTT 170

Query: 452 PAVPALWWAEALVDYIGHSN 471
            A   L  A      +G SN
Sbjct: 171 IAFEQLHQAAFRNGGLGLSN 190


>AL032678-1|CAB54320.1|  410|Caenorhabditis elegans Hypothetical
           protein VW06B3R.1a protein.
          Length = 410

 Score = 31.1 bits (67), Expect = 2.5
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 8/80 (10%)

Query: 392 VLALPMNVVRRYGAETAAVFVVVALLGILWSGIDAYLPWTVEEMNGTYTEVGLTLTAGAL 451
           VLA+ +NVVR   A      VV++LLG L  G +A+ PW VE++         T   G  
Sbjct: 105 VLAIEVNVVRDQSA------VVLSLLGQL--GNNAFKPWDVEDVKHDTLPADATYLTGTT 156

Query: 452 PAVPALWWAEALVDYIGHSN 471
            A   L  A      +G SN
Sbjct: 157 IAFEQLHQAAFRNGGLGLSN 176


>Z48638-7|CAA88571.2|  340|Caenorhabditis elegans Hypothetical
           protein ZK892.4 protein.
          Length = 340

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 382 PEWWWHTATGVLALPMN---VVRRYGAETAAVFVVVALLGIL--WSGIDAYLPWTVEEMN 436
           P   W+   G++   ++      R   ET      VAL G+L  +SG++A  PW    M 
Sbjct: 93  PSTLWNNNKGLIICKISGYGQTGRMSQETGHDINYVALSGMLPTFSGVNATRPWPPANML 152

Query: 437 GTYTEVGLTLTAGALPAVPA 456
             +   GL+   G L A+ A
Sbjct: 153 ADFAGGGLSAAFGILSAIYA 172


>Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical
           protein ZK1320.6 protein.
          Length = 539

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 87  RPQVLFMCNADSAYVMQEVCKEDMRCNRWSGVLAVGSCEYG 127
           +P  L  C   S+YV++ VCKE + C+  S ++ +   +YG
Sbjct: 152 KPPPLVHCRLHSSYVVEFVCKE-LSCDTESPLMCMMCRDYG 191


>AC006624-6|AAN84836.1|  355|Caenorhabditis elegans Hypothetical
           protein C53D5.1c protein.
          Length = 355

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 37/121 (30%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 258 LDPYDEPDGVLADAEC--RLV--IGDPTSSFWAYFILRSIAD-IWPTAALALLSTACVIA 312
           +D +DEP   L DAE   R+V  + D     W     R + + +WPT  L     A   A
Sbjct: 97  MDQFDEPKDHLTDAEFSDRVVDMVNDELRLGWPKHYRRHLMETVWPT-LLRTKGEAMSKA 155

Query: 313 TRETSLGRGDVGRQIAFGTLGLA-IFPPLAGLAADQMPDTPYLVPFILHAIFMILAALIL 371
            R +          I F  L L  + P L G     M  T  LV F +   +  L A IL
Sbjct: 156 DRRSLWALLKQPEFILFRVLPLTRVTPKLIG-TCGHMYQTESLVAFKMKGYYTNLKAKIL 214

Query: 372 V 372
           V
Sbjct: 215 V 215


>AC006624-5|AAK68265.1|  418|Caenorhabditis elegans Hypothetical
           protein C53D5.1b protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 37/121 (30%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 258 LDPYDEPDGVLADAEC--RLV--IGDPTSSFWAYFILRSIAD-IWPTAALALLSTACVIA 312
           +D +DEP   L DAE   R+V  + D     W     R + + +WPT  L     A   A
Sbjct: 160 MDQFDEPKDHLTDAEFSDRVVDMVNDELRLGWPKHYRRHLMETVWPT-LLRTKGEAMSKA 218

Query: 313 TRETSLGRGDVGRQIAFGTLGLA-IFPPLAGLAADQMPDTPYLVPFILHAIFMILAALIL 371
            R +          I F  L L  + P L G     M  T  LV F +   +  L A IL
Sbjct: 219 DRRSLWALLKQPEFILFRVLPLTRVTPKLIG-TCGHMYQTESLVAFKMKGYYTNLKAKIL 277

Query: 372 V 372
           V
Sbjct: 278 V 278


>AC006624-4|AAK68264.1|  420|Caenorhabditis elegans Hypothetical
           protein C53D5.1a protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 7.5
 Identities = 37/121 (30%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 258 LDPYDEPDGVLADAEC--RLV--IGDPTSSFWAYFILRSIAD-IWPTAALALLSTACVIA 312
           +D +DEP   L DAE   R+V  + D     W     R + + +WPT  L     A   A
Sbjct: 162 MDQFDEPKDHLTDAEFSDRVVDMVNDELRLGWPKHYRRHLMETVWPT-LLRTKGEAMSKA 220

Query: 313 TRETSLGRGDVGRQIAFGTLGLA-IFPPLAGLAADQMPDTPYLVPFILHAIFMILAALIL 371
            R +          I F  L L  + P L G     M  T  LV F +   +  L A IL
Sbjct: 221 DRRSLWALLKQPEFILFRVLPLTRVTPKLIG-TCGHMYQTESLVAFKMKGYYTNLKAKIL 279

Query: 372 V 372
           V
Sbjct: 280 V 280


>Z81524-5|CAB04253.2|  283|Caenorhabditis elegans Hypothetical
           protein F32H5.5 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 10/16 (62%), Positives = 16/16 (100%)

Query: 64  LILSTIFYSLLLTVPY 79
           +++STIFYS+LLT+P+
Sbjct: 125 IMVSTIFYSILLTIPF 140


>AL022289-1|CAA18372.1|  354|Caenorhabditis elegans Hypothetical
           protein ZK1225.1 protein.
          Length = 354

 Score = 29.1 bits (62), Expect = 9.9
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 216 STADSNWCTYQTAGPSKCLVPPERLAEMNQDDDCTPAVRCQVLDPYDEPDGVLADAEC-- 273
           STA++  C   T     C V P+  + +    DC+     + L+  DEP+  L   E   
Sbjct: 50  STAEN--CKCDTVNEDFCYVNPQNSSSIGMKFDCSLVGTLEFLNLLDEPESFLNTTETSR 107

Query: 274 ---RLVIGDPTSSFWAYFILRSIADI 296
               LV    TS     + L S A I
Sbjct: 108 SVESLVFVSATSDSHLKYTLESYASI 133


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.138    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,146,191
Number of Sequences: 27539
Number of extensions: 620777
Number of successful extensions: 1468
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1465
Number of HSP's gapped (non-prelim): 14
length of query: 633
length of database: 12,573,161
effective HSP length: 86
effective length of query: 547
effective length of database: 10,204,807
effective search space: 5582029429
effective search space used: 5582029429
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)