Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001190-TA|BGIBMGA001190-PA|undefined
(633 letters)
Database: bee
429 sequences; 140,377 total letters
Searching.....................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450 monoo... 26 0.82
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.1
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.1
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 26 1.1
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 2.5
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 24 4.4
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 23 7.6
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 23 7.6
>DQ244074-1|ABB36784.1| 517|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 517
Score = 26.2 bits (55), Expect = 0.82
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 361 AIFMILAALILVFDSHMPLSTPEWWWHTAT 390
A F ++AA++L + P WW+ TAT
Sbjct: 6 AWFEVIAAVLLTILIFVTSHRPAWWFWTAT 35
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.1
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 305 LSTACVIATRETSLG---RGDVGRQIAFGTLGLAIFPPLAGLAADQMPDTPYLVPFI--- 358
L CV+ + LG D G ++ G L L A+ MP T VP I
Sbjct: 201 LIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSY 260
Query: 359 ------LHAIFMILAALILVFDSHMP--LSTPEW 384
+ A ++L L+L+F P P W
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSW 294
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.1
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 305 LSTACVIATRETSLG---RGDVGRQIAFGTLGLAIFPPLAGLAADQMPDTPYLVPFI--- 358
L CV+ + LG D G ++ G L L A+ MP T VP I
Sbjct: 201 LIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSY 260
Query: 359 ------LHAIFMILAALILVFDSHMP--LSTPEW 384
+ A ++L L+L+F P P W
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSW 294
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 25.8 bits (54), Expect = 1.1
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 305 LSTACVIATRETSLG---RGDVGRQIAFGTLGLAIFPPLAGLAADQMPDTPYLVPFI--- 358
L CV+ + LG D G ++ G L L A+ MP T VP I
Sbjct: 201 LIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSY 260
Query: 359 ------LHAIFMILAALILVFDSHMP--LSTPEW 384
+ A ++L L+L+F P P W
Sbjct: 261 FNCIMFMVASSVVLTVLVLIFHHRTPDRYVMPSW 294
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 2.5
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 305 LSTACVIATRETSLG---RGDVGRQIAFGTLGLAIFPPLAGLAADQMPDTPYLVPFI--- 358
L CV+ + LG D G ++ G L L A+ MP T VP I
Sbjct: 269 LIVPCVLISSMALLGFTLPPDSGEKLTLGVTILLSLTVFLNLVAESMPTTSDAVPLIGSY 328
Query: 359 LHAI-FMILAALIL 371
+ I FM+ ++++L
Sbjct: 329 FNCIMFMVASSVVL 342
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.8 bits (49), Expect = 4.4
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 331 TLGLAIFPPLAGLAADQMPDTPYLVP 356
T+ I+PP+ G + M P+L+P
Sbjct: 839 TMAGVIYPPVIGTPSTGMMYKPFLIP 864
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 23.0 bits (47), Expect = 7.6
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 169 EAAREKTHFDLNPPHLCYNGECNVYMQHVARLRIPLSLIAPDP 211
E R+ T DLN LC+ + + + +PL + DP
Sbjct: 173 EHKRQPTSIDLNAVRLCF--QVFLEGSQKRKFNVPLQPVVSDP 213
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 23.0 bits (47), Expect = 7.6
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 169 EAAREKTHFDLNPPHLCYNGECNVYMQHVARLRIPLSLIAPDP 211
E R+ T DLN LC+ + + + +PL + DP
Sbjct: 173 EHKRQPTSIDLNAVRLCF--QVFLEGSQKRKFNVPLQPVVSDP 213
Database: bee
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 140,377
Number of sequences in database: 429
Lambda K H
0.324 0.138 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,515
Number of Sequences: 429
Number of extensions: 6976
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 8
length of query: 633
length of database: 140,377
effective HSP length: 62
effective length of query: 571
effective length of database: 113,779
effective search space: 64967809
effective search space used: 64967809
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)
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