Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001189-TA|BGIBMGA001189-PA|undefined
         (109 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   0.66 
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    25   3.5  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    24   6.2  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    24   6.2  

>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 0.66
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 46  YGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTT------ARKRSADNSGYPQSKRFRE 99
           Y    ++ S  N  ++   + E+P+ KN+  L+          K    NSG P SK FR 
Sbjct: 139 YVLEGLQMSKTNFSSSTVPVSELPLPKNLEKLIDVHPSWFCLMKALWTNSGLPFSKGFRS 198

Query: 100 GSLQIH 105
            S + H
Sbjct: 199 PSYKGH 204


>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 68  VPIEKNVNTLVTTARKRSA 86
           +P+EK  +T++ T +KR A
Sbjct: 568 IPVEKRASTVLNTKKKRKA 586


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 51  VKTSGINHMATDCEMQEVPIEKNVNTLVTTARK--------RSADNSGYPQSKRFREGSL 102
           +K   +  +    E+Q++   + VNT++ T++            D SG    K   EGS+
Sbjct: 94  LKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSEGSI 153

Query: 103 Q 103
           Q
Sbjct: 154 Q 154


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 28  DANQPGQCHNVHISTNFYYGFHEVKTSG-INHMATDCEMQEVPIEKNVNTLVTTARK 83
           D   P   H V        G  E   SG + H+AT   +Q+V ++     ++T AR+
Sbjct: 157 DGCDPSVAHRVKKQIQQLGGHVETFFSGNVTHVATVRAIQDVSVKYAKQDVITKARQ 213


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,921
Number of Sequences: 5004
Number of extensions: 18841
Number of successful extensions: 39
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 4
length of query: 109
length of database: 2,362,478
effective HSP length: 64
effective length of query: 45
effective length of database: 2,042,222
effective search space: 91899990
effective search space used: 91899990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 48 (23.4 bits)