Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001189-TA|BGIBMGA001189-PA|undefined
         (109 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.4  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   5.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   7.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 51  VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 81
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 51  VKTSGINHMATDCEMQEVPIEKNVNTLVTTA 81
           V T+GI   A       VPI+K  N   TTA
Sbjct: 532 VGTAGIILQAPTLYDDRVPIDKKFNEFGTTA 562


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 2.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 73  NVNTLVTTARKRSADNSGYPQSK 95
           NVN L+   R  ++DN    Q+K
Sbjct: 573 NVNDLIMNTRCANSDNQNNNQNK 595


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 62  DCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKRFREGSLQIHY 106
           +C  QE  I K+   L   AR  S DN     SK +    +  HY
Sbjct: 205 ECSNQEYEIMKDNLLLYNHARLMSQDN----HSKEYLVSIMFSHY 245


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 38  VHISTNFYYGFHEVKTSGINHMATDCEMQEVP 69
           VH+   +     +V      H+A  C+ Q VP
Sbjct: 702 VHVPPRWIVEPTDVSVERNKHVALHCQAQGVP 733


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 78  VTTARKRSADNSGYPQSKRFREGSLQIHYLI 108
           VTT  K       +P+ K  R+G L+  + I
Sbjct: 139 VTTKEKAKFPQEFFPECKWSRKGFLRTRWSI 169


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 62  DCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKRFR 98
           D E++++P+ K V          S  +  Y   K+FR
Sbjct: 612 DKEVEDMPVLKRVLQAPPLYDTNSLMDEAYKPHKKFR 648


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,542
Number of Sequences: 429
Number of extensions: 1237
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 109
length of database: 140,377
effective HSP length: 50
effective length of query: 59
effective length of database: 118,927
effective search space:  7016693
effective search space used:  7016693
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)