GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001189-TA|BGIBMGA001189-PA|undefined
         (109 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58716| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.47 
SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   0.62 
SB_42105| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.4  
SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)                   28   1.4  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  27   2.5  
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)           27   4.4  
SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)                27   4.4  
SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.4  
SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)                       26   5.8  
SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)                 26   7.7  

>SB_58716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 14 RYNFDAVRPAPICGDANQPGQCHN 37
          R+N D VRP P+  +A +P   HN
Sbjct: 38 RHNIDKVRPRPMDREARRPSSAHN 61


>SB_3591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1585

 Score = 29.5 bits (63), Expect = 0.62
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 43   NFYYGFHEVKTSGINHMATDCEMQEV--PIEKNVNTLVT-TARKRSADNSGYPQSKRFRE 99
            NF  G+  V+TS  +    +C+ +E     E+ ++T++   A K  AD+   P  K+   
Sbjct: 1488 NFVQGYENVETSADSEKICECKSREAQNTTEERLSTVMNKKADKSDADDDNIPSFKQLYV 1547

Query: 100  GSLQ 103
             SL+
Sbjct: 1548 RSLR 1551


>SB_42105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 29 ANQPGQCHNVHISTNFYYGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRSADN 88
          AN P +  ++H   N  +      TS     AT  E+Q    E   N+L    ++R  +N
Sbjct: 2  ANLPAKSSDIHFILNIEFLQPGGSTSS-RAAATAVELQFALYESYYNSLAVVLQRRDWEN 60

Query: 89 SGYPQSKR 96
          +G  Q  R
Sbjct: 61 TGVTQLNR 68


>SB_207| Best HMM Match : RVT_1 (HMM E-Value=7.4e-06)
          Length = 773

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 13  ARYNFDAVRPAPICGDANQPGQCHN 37
           AR+  D VRP P+  +A +P   HN
Sbjct: 102 ARHYIDQVRPRPMDREARRPSSAHN 126


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)

Query: 26  CGDANQPGQCHNVHISTNFYYGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRS 85
           CG +++P +C          +G    K +G NH ++ C+ +EVP  K V+ L   +   S
Sbjct: 50  CGSSHKPKECKA--------FGKECFKCNGKNHFSSMCKSKEVP-PKKVHDLEKDSVSES 100

Query: 86  ADN 88
            D+
Sbjct: 101 DDS 103


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 14  RYNFDAVRPAPICGDANQPGQCHN 37
           R+  D VRP P+  +A +P   HN
Sbjct: 392 RHYIDKVRPRPMDREARRPSSAHN 415


>SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)
          Length = 534

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 14 RYNFDAVRPAPICGDANQPGQCHN 37
          R+  D VRP P+  +A +P   HN
Sbjct: 38 RHYIDKVRPRPMDREAKRPSSAHN 61


>SB_19953| Best HMM Match : Trehalase (HMM E-Value=0.66)
          Length = 1097

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 14 RYNFDAVRPAPICGDANQPGQCHN 37
          R+  D VRP P+  +A +P   HN
Sbjct: 38 RHYIDKVRPRPMDREAGRPSSAHN 61


>SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 14 RYNFDAVRPAPICGDANQPGQCHN 37
          R+  D VRP P+  +A +P   HN
Sbjct: 38 RHYIDKVRPRPMDREAKRPSSAHN 61


>SB_12991| Best HMM Match : TP2 (HMM E-Value=1.4)
          Length = 296

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)

Query: 27  GDANQPGQCHNVHISTNFYYGFH 49
           G A++PGQC +  ++ ++YY ++
Sbjct: 243 GQASRPGQCKSRLLAMDYYYYYY 265


>SB_12220| Best HMM Match : RVT_1 (HMM E-Value=7.3e-19)
          Length = 2253

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 33  GQCHNVHISTNFY-YGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRSADN 88
           G+C + H       +G    K +G NH ++ C+ +EVP  K V+ L   +   S D+
Sbjct: 581 GRCDSSHKPKECKAFGKECFKCNGKNHFSSMCKSKEVP-PKKVHDLEKDSVSESDDS 636


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,851,786
Number of Sequences: 59808
Number of extensions: 144608
Number of successful extensions: 902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 11
length of query: 109
length of database: 16,821,457
effective HSP length: 72
effective length of query: 37
effective length of database: 12,515,281
effective search space: 463065397
effective search space used: 463065397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)