GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001189-TA|BGIBMGA001189-PA|undefined
         (109 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L24158-1|AAA16099.1| 1000|Homo sapiens integrin alpha 9 protein ...    28   5.2  
D25303-1|BAA04984.1| 1035|Homo sapiens integrin alpha subunit pr...    28   5.2  
BC030198-1|AAH30198.1|  632|Homo sapiens ITGA9 protein protein.        28   5.2  

>L24158-1|AAA16099.1| 1000|Homo sapiens integrin alpha 9 protein
           protein.
          Length = 1000

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 23  APICGDANQPGQCHNVHISTNFYYGFHEVKTSGINHM 59
           AP C D  QP  C NV    +F +G H  +  G+N++
Sbjct: 444 APQCHDGQQPVNCLNVTTCFSF-HGKHVPEEIGLNYV 479


>D25303-1|BAA04984.1| 1035|Homo sapiens integrin alpha subunit
           protein.
          Length = 1035

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 23  APICGDANQPGQCHNVHISTNFYYGFHEVKTSGINHM 59
           AP C D  QP  C NV    +F +G H  +  G+N++
Sbjct: 479 APQCHDGQQPVNCLNVTTCFSF-HGKHVPEEIGLNYV 514


>BC030198-1|AAH30198.1|  632|Homo sapiens ITGA9 protein protein.
          Length = 632

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 23  APICGDANQPGQCHNVHISTNFYYGFHEVKTSGINHM 59
           AP C D  QP  C NV    +F +G H  +  G+N++
Sbjct: 479 APQCHDGQQPVNCLNVTTCFSF-HGKHVPEEIGLNYV 514


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,898
Number of Sequences: 224733
Number of extensions: 614632
Number of successful extensions: 1088
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1088
Number of HSP's gapped (non-prelim): 3
length of query: 109
length of database: 73,234,838
effective HSP length: 79
effective length of query: 30
effective length of database: 55,480,931
effective search space: 1664427930
effective search space used: 1664427930
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)