Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001189-TA|BGIBMGA001189-PA|undefined
(109 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 29 0.90
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 29 0.90
At4g32820.1 68417.m04668 expressed protein ; expression supporte... 27 2.7
At5g01290.1 68418.m00039 mRNA capping enzyme family protein simi... 27 3.6
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 26 4.8
At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi... 26 4.8
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi... 26 4.8
At2g16980.2 68415.m01957 expressed protein 26 4.8
At2g16980.1 68415.m01956 expressed protein 26 4.8
At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger) fa... 26 6.3
At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) famil... 26 6.3
At5g38190.1 68418.m04602 myosin heavy chain-related 25 8.4
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 28.7 bits (61), Expect = 0.90
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 57 NHMATDCEMQEVPIEKNVNTLVTTARKRSADNSG 90
N + E +EVP++ N N+L+ ++ + DNSG
Sbjct: 265 NKCVVNRETKEVPVQVNQNSLLISSDRDREDNSG 298
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 28.7 bits (61), Expect = 0.90
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 45 YYGFHEVKTSGINHMATDCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKRFREGSL 102
Y H S + H+ E + +E+N L+T ++ A G+ S GSL
Sbjct: 258 YISSHSTDQSELKHLKGQLEEIKAELEENRRKLITLKMQKDAACEGHVTSPAIANGSL 315
>At4g32820.1 68417.m04668 expressed protein ; expression supported
by MPSS
Length = 1817
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 65 MQEVPIEKNVNTLVTTARKRSADNSGYPQSKRFREGSLQI 104
++EV +EKN N + + S + GY + ++ + S QI
Sbjct: 860 LEEVHVEKNENNKTESKKDGSEEQVGYREKEQSEQQSKQI 899
>At5g01290.1 68418.m00039 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF03919: mRNA capping enzyme
C-terminal domain
Length = 607
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 41 STNFYYGFHEVKTSGINHMATDCEMQE-VPIEKNVNTLV 78
+T YY ++K GI H+ C ++ VP +VNT V
Sbjct: 127 NTTRYYPTLDLKKDGIKHVKIACRGRDAVPDNVSVNTFV 165
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 56 INHMATDCEMQEVPIEKNVNTLVTTARKRSADNSGYPQSKRFREG 100
+ HM D E + V + + R D++ Y QSKR R G
Sbjct: 116 LQHMVFDAESKSVIHTEMAKKNLFVKRGIVGDSNAYDQSKRLRTG 160
>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 672
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 41 STNFYYGFHEVKTSGINHMATDCEMQE-VPIEKNVNTLV 78
+T YY ++K GI H+ C+ ++ VP +VN V
Sbjct: 145 NTTRYYSTTDLKKEGIKHVKIACKGRDAVPDNVSVNAFV 183
>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
to mRNA capping enzyme [Xenopus laevis] GI:7239232;
contains Pfam profiles PF01331: mRNA capping enzyme
catalytic domain, PF00782: Dual specificity phosphatase
catalytic domain
Length = 471
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 41 STNFYYGFHEVKTSGINHMATDCEMQE-VPIEKNVNTLV 78
+T YY ++K GI H+ C+ ++ VP +VN V
Sbjct: 145 NTTRYYSTTDLKKEGIKHVKIACKGRDAVPDNVSVNAFV 183
>At2g16980.2 68415.m01957 expressed protein
Length = 461
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 14 RYNFDAVRPAPICGDANQPGQCHNVHISTNFYYGFHEVKT 53
RY A+ P+C P TNF+Y F+ +KT
Sbjct: 77 RYGIKAMLTLPMCLSVLPPAIL-GYRRDTNFFYAFYVIKT 115
>At2g16980.1 68415.m01956 expressed protein
Length = 408
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 14 RYNFDAVRPAPICGDANQPGQCHNVHISTNFYYGFHEVKT 53
RY A+ P+C P TNF+Y F+ +KT
Sbjct: 77 RYGIKAMLTLPMCLSVLPPAIL-GYRRDTNFFYAFYVIKT 115
>At2g26135.1 68415.m03136 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF01485:IBR domain
Length = 384
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 46 YGFHEVKTSGINHMATDCEMQEV 68
YG E T GINH++ C+ ++
Sbjct: 82 YGLSEAVTLGINHISICCDNNQI 104
>At1g28350.1 68414.m03483 tRNA synthetase class I (W and Y) family
protein contains Pfam profile: PF00579 tRNA synthetases
class I (W and Y)
Length = 824
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 7 ESCLQGARY-NFDAVRPAPICGDANQP-GQCH 36
E C+Q N A +PAPIC D +P G+ H
Sbjct: 491 EECIQEDELKNLLAKKPAPICYDGFEPSGRMH 522
>At5g38190.1 68418.m04602 myosin heavy chain-related
Length = 969
Score = 25.4 bits (53), Expect = 8.4
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 2 PANTIESCLQGARYNFDAVRPAPICGDANQPGQCHNVHISTNFYYGFHEVKTSGINHMAT 61
P N+++S ++ + + + +P G + + + H+V ST+ EV +SGI+
Sbjct: 6 PNNSVDSYIRERTSSDLSGKKSPSIGWSEESSR-HSVGSSTHRGKSA-EVPSSGIDRREI 63
Query: 62 DCEMQEVPIEKNVNTLVTTAR-KRSADNSGYPQSKRFREGS 101
VP V T+V + R +D +G + RE +
Sbjct: 64 SAVRDRVPFSSRVPTVVPSLRDDTDSDGAGNRYADDERESA 104
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.133 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,590
Number of Sequences: 28952
Number of extensions: 95767
Number of successful extensions: 164
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 12
length of query: 109
length of database: 12,070,560
effective HSP length: 71
effective length of query: 38
effective length of database: 10,014,968
effective search space: 380568784
effective search space used: 380568784
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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