Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001188-TA|BGIBMGA001188-PA|IPR001247|Exoribonuclease,
IPR012462|Protein of unknown function DUF1671
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 166 9e-42
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c... 99 1e-21
SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces pom... 36 0.017
SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ... 34 0.089
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 30 1.1
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar... 30 1.5
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa... 29 2.5
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit... 29 3.4
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 29 3.4
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 29 3.4
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 4.4
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 28 4.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 5.9
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 7.8
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 27 7.8
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 166 bits (404), Expect = 9e-42
Identities = 86/243 (35%), Positives = 146/243 (60%), Gaps = 7/243 (2%)
Query: 4 VYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIK 63
++K I P ++ + ++ R DGR+ E R I +N N I TA+ SA+++ G VCGIK
Sbjct: 16 IFKKITPEQYLSHLLNQDVRSDGRSVSEFREIVINDNCISTANGSAIIRAGENVFVCGIK 75
Query: 64 LELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKD 123
E+A P P+ G+++ N+EL LCSSK++PGPPSD AQV++ + + ++ S I+L+
Sbjct: 76 AEIAEPFENSPNEGWIVPNLELSPLCSSKFKPGPPSDLAQVVSQELHQTLQQSNLINLQS 135
Query: 124 LCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVETNE 183
LCI K AWV+Y D++C+++DGS D AL A+ KT+ LP+ +D + E + +
Sbjct: 136 LCIFEKKAAWVLYADIICLNYDGSAFDYAWAALFAALKTVKLPTAVWDEDLERVICASTL 195
Query: 184 RINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQK 243
+++ + S++V++ LL DPT+ EE++ ++++ +K ++ I K
Sbjct: 196 TRPVQLSTEVRSFSWSVFDD-----KLLADPTDEEEDL-STEFLTIMLNSSKNIV-KIIK 248
Query: 244 LGG 246
LGG
Sbjct: 249 LGG 251
>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 291
Score = 99 bits (238), Expect = 1e-21
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 11/226 (4%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITN 82
RLDGR + R++++ V G+T V+ I E+ P + P G
Sbjct: 24 RLDGRQLSDFRSLEIQFGK---EYGQVDVSFGHTRVMARITTEITKPYTDRPFDGIFSIT 80
Query: 83 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 142
EL L S + G SD VI+ ++ + ++ S +D + LCI+ + W V + I
Sbjct: 81 TELTPLAYSAFEAGRVSDQEIVISRLIEKAVRRSNALDTESLCIISGQKCWHVRASVHFI 140
Query: 143 DHDGSLVDACIIALIASFKTLLLPSVNYDTETEEI-KVETNERINLKIHGLPVATSFAVY 201
+HDG+LVDA IA+IA+ P + E + VE + L I +P+ +F+ +
Sbjct: 141 NHDGNLVDAACIAVIAALCHFRRPELTVVGEEVTVHPVEERVPVPLSILHMPICVTFSFF 200
Query: 202 EHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKLGG 246
+ + I+ D T EE++C G ++ I+ NK +C I K GG
Sbjct: 201 NNGELAIV---DATLEEEDLCNG---SMTITLNKNREVCQIYKAGG 240
>SPAC3G9.10c |ski6||exosome subunit Ski6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 36.3 bits (80), Expect = 0.017
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 11 VKHFNDYISIK-TRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVC 60
+ HF + +S++ R DGR +DE RN + + + + SA ++ GNT V+C
Sbjct: 1 MSHF-EILSLEGLRNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLC 50
>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 244
Score = 33.9 bits (74), Expect = 0.089
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 633 DDGWGCAYRSMQTIFSWFRY 652
D GWGC +R++Q + SW +Y
Sbjct: 37 DRGWGCGWRNIQMLISWLQY 56
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 244 LGGGSLSTEN--NEEAIRLAE-QHTIAVEKRLSKIDTTESTGCLYGLMYDGTLLVVGFSL 300
+ S+ EN ++ ++++ + ++ I +K +S +DTT + GCL G +Y G + F
Sbjct: 152 VSNNSIRMENTLHDNSVQIIDLKNNILQKKAISCLDTTNAVGCL-GTLY-GQYCIFNFKN 209
Query: 301 ESFET 305
SF T
Sbjct: 210 GSFST 214
>SPAC1002.01 ||SPAC1610.05|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 357 IIINREKDMKAHFIVHDKFEETKYEVFSPEELWKQFLHV 395
I++N+ K + FI+ +K + + + + S +LWK+ L +
Sbjct: 31 ILLNKRKFHYSPFILQEKVQSSNHTIRSDTKLWKRLLKI 69
>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1076
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 9 HPVKHFN---DYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGN 55
HPV ++ +Y++ + R F EH+N+K+ V S SA K N
Sbjct: 529 HPVILYDPIHEYVNHELRKRENEFSEHKNVKIFVASYNLNGCSATTKLEN 578
>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 501 VKTAVKMMTTQRKPAFYISMPLRIDTLAMIHRNTKLL-DLYIVLVEAACRSLRLMESVL 558
+K + KM ++RK A+ +P +T HR T ++ LY + +++ ++R +ES L
Sbjct: 471 IKESDKMDFSRRKDAYISMLPFSPNTENTAHRVTIMVAKLYNIKLDSLIAAIRYVESCL 529
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 443 ASDVGLTGTSTEATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDIL 496
ASD G + + + V ++ P S Y+IN+A+ P S +KV ++IL
Sbjct: 342 ASDKRKEGFTEKEETADAVVTLVPSHSSSPVNYSINSAKSTPAS--IKVNEEIL 393
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 28.7 bits (61), Expect = 3.4
Identities = 19/71 (26%), Positives = 30/71 (42%)
Query: 260 LAEQHTIAVEKRLSKIDTTESTGCLYGLMYDGTLLVVGFSLESFETETEKNSYSQLLLNF 319
+ E+ ++V K + + TG L G D L V ++ +T T SYS L
Sbjct: 784 IKEKQKVSVPKGAYLLGVADETGTLKGHYDDAVLSVPEIFIQITDTSTSFGSYSTGKLKT 843
Query: 320 PAEIELCGVVK 330
+ LC V +
Sbjct: 844 RVIVGLCIVAR 854
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 58 VVCGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVS 110
++ +K ++ AE+ + L T + AL SS + PS YAQ IN ++S
Sbjct: 617 IIAELKKKVEENGAEDRSVKDLATILYETALLSSGFTLDDPSAYAQRINRLIS 669
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 38 NVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPG 96
+V I + V CG V +K +A ++P+ FL+TN + + K+ PG
Sbjct: 141 DVEKIGPDPSVGAVLCGMDMHVTYLKYCMAFQYLQDPNCAFLLTNQDSTFPTNGKFLPG 199
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 299 SLESFETETEKNSYSQLLLNFPAEIELCGVVKFGE 333
+ ++ E E EK + +L NF I+ CG V G+
Sbjct: 745 TFDTLEEEYEKTVATDILRNFAESIKTCGPVVLGD 779
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 496 LSDKLVKTAVKMMTTQRKPAFYISMPLRIDTLAMIHRNTKLLDLYI 541
+SDKLV TAV + + FY P +D + +++ L+ ++
Sbjct: 819 VSDKLVNTAVLFINIELLSEFYYQFPRELDQRLIHSLSSEQLNAFV 864
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 7.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 627 MQDNFNDDGWGCAYRSMQTIFS 648
+++ +D GWGC RS QT+ +
Sbjct: 63 LENMTSDTGWGCMIRSTQTLLA 84
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,732,284
Number of Sequences: 5004
Number of extensions: 161193
Number of successful extensions: 444
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 16
length of query: 805
length of database: 2,362,478
effective HSP length: 79
effective length of query: 726
effective length of database: 1,967,162
effective search space: 1428159612
effective search space used: 1428159612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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