GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001188-TA|BGIBMGA001188-PA|IPR001247|Exoribonuclease,
IPR012462|Protein of unknown function DUF1671
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488...   242   9e-64
11_03_0222 + 11880333-11880551,11880667-11880736,11880839-118809...    93   1e-18
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494...    84   5e-16
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210...    53   8e-07
02_01_0052 + 392339-392395,392604-393400,393520-393634,393831-39...    35   0.22 
12_02_0460 + 19360075-19360320,19361189-19361368                       31   3.6  
09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    30   8.4  

>12_01_1054 +
           10847342-10847543,10847627-10847962,10848557-10848807,
           10849226-10849313,10849548-10849723,10850597-10850656,
           10850811-10850901,10851563-10851639,10852565-10852653,
           10852950-10853061,10853623-10853725,10854892-10855121
          Length = 604

 Score =  242 bits (592), Expect = 9e-64
 Identities = 104/196 (53%), Positives = 142/196 (72%), Gaps = 7/196 (3%)

Query: 614 VALVRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKI 673
           ++L+ G Y Y+HY+ D  +D+GWGCAYRS+QTI SW+R Q Y+ + VP+H+EIQQ LV+I
Sbjct: 407 ISLIDGSYEYYHYLHDGIDDNGWGCAYRSLQTIMSWYRLQQYSSINVPSHREIQQVLVEI 466

Query: 674 GDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPI 733
           GDK  +FIGS++WIG+ E+ F L+ LLGV  ++I   +G EL     EL  HF+T G+P+
Sbjct: 467 GDKDPSFIGSREWIGAIELSFVLDKLLGVSCKVINVRSGDELPEKCRELAIHFETQGTPV 526

Query: 734 MIGGGVLAHTILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSS------DF 787
           MIGGGVLA+T+LG++YN  + +  +LILDPHYTGA+D+  ++N GWCGWK S       F
Sbjct: 527 MIGGGVLAYTLLGVDYNESSGDCAFLILDPHYTGADDLKKIVNGGWCGWKKSIDSKGRSF 586

Query: 788 WNKTAHYNLCLPQTRP 803
           + K   YNL LPQ RP
Sbjct: 587 FLKDKFYNLLLPQ-RP 601


>11_03_0222 +
           11880333-11880551,11880667-11880736,11880839-11880944,
           11881490-11881556,11881597-11881692
          Length = 185

 Score = 92.7 bits (220), Expect = 1e-18
 Identities = 42/134 (31%), Positives = 75/134 (55%)

Query: 3   EVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGI 62
           E Y+ + P+     ++    R D R   E R   + + ++ +A  SA+V+ G+T ++  I
Sbjct: 20  EAYRRLFPLAFLERHLRESVRPDARRPAEARPTTVALAAVSSAHGSALVRLGDTAMLASI 79

Query: 63  KLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLK 122
           KLE+  P  E PD G +     +P +CS   RPG P++ A VI+  + +I+ +S  ++LK
Sbjct: 80  KLEVMSPSGEAPDEGSIAVEFHMPPICSPLVRPGRPAEVAPVISKNLEDILMSSGMLNLK 139

Query: 123 DLCIVPDKLAWVVY 136
           +LC++  K +W+ Y
Sbjct: 140 ELCLISGKASWLAY 153


>02_04_0185 -
           20748206-20748405,20749067-20749232,20749373-20749471,
           20749487-20749561,20749663-20749743,20750121-20750274,
           20750330-20750425,20750518-20750727,20750746-20750957
          Length = 430

 Score = 83.8 bits (198), Expect = 5e-16
 Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 20/196 (10%)

Query: 46  DASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVI 105
           D SA V+ G+T V+     +L  P  + P+ G L    E   +    + PG P + A  +
Sbjct: 73  DGSAEVQLGDTRVMGYATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIEL 132

Query: 106 NNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDG-------------SLVDAC 152
             +V   ++ S+ +D++ LC+V  K  W V  D+  +D+ G             +L+DA 
Sbjct: 133 GRVVDRGLRESRAVDMESLCVVAGKHVWSVRVDLHILDNGGELNVPDAMVLSLRNLIDAA 192

Query: 153 IIALIASFKTLLLPSVNYDTET-EEIKV---ETNERINLKIHGLPVATSFAVYEHFQSQI 208
            IA +A+  T   P      E  +++ V   E  + + L IH LP+A +FA   +F    
Sbjct: 193 NIAALAALSTFRRPECTVGGEDGQQVTVHDPEVRDPLPLTIHHLPIAVTFA---YFGEGN 249

Query: 209 ILLTDPTNYEEEMCGG 224
           I++ DPT  EE + GG
Sbjct: 250 IMVIDPTYKEEAVMGG 265


>12_02_0002 +
           12119832-12120003,12120620-12120866,12121011-12121050,
           12121584-12121676,12124850-12124928,12124973-12125019,
           12126178-12126266,12126353-12126424,12126617-12126710,
           12127167-12127206,12127321-12127445,12130472-12130615,
           12131510-12131740
          Length = 490

 Score = 53.2 bits (122), Expect = 8e-07
 Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 19/169 (11%)

Query: 91  SKYRPGPPSDYA--QVINNIV-SEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 147
           +K   G  SD A  +VIN ++  + +     IDL  L +V  K+ W +Y D + +  DG+
Sbjct: 297 AKRSSGWSSDDASGEVINLLIFKKTLMKRAAIDLSSLIVVDGKVCWDLYIDGLVVSSDGN 356

Query: 148 LVDACIIALIASFKTLLLPSVNYD-----TETEEIKVETNERINLKIHGLPV-ATSFAVY 201
           L+DA   A+  +     +P VN        E  E+ V   E +      +PV  T   V 
Sbjct: 357 LLDALAAAIKVALSDTGIPKVNVSLSATTDEEPEVNVSDEEFLQFDTSSVPVIVTLTKVG 416

Query: 202 EHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNK-GLLCGIQKLGGGSL 249
           +H+      + D T+ EE       S + +S N+ G + G+ K GG  L
Sbjct: 417 KHY------IVDATSEEESQM---SSAVSVSVNRHGQIRGLTKRGGAGL 456


>02_01_0052 +
           392339-392395,392604-393400,393520-393634,393831-393926,
           394008-394079,395286-395381
          Length = 410

 Score = 35.1 bits (77), Expect = 0.22
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 19/101 (18%)

Query: 625 HYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVE--------VPTHKEIQQCLVKIGDK 676
           HY   +  D GWGC +R++Q + S    Q     E        VP    +Q+ L    DK
Sbjct: 101 HYQSLSSEDKGWGCGWRNIQMLSSHLLKQRPEAREALFGGSGFVPDIPSLQRWLEIAWDK 160

Query: 677 QSTFIGS----------KQWIGSTEVMFCLETLLGVQSRII 707
           +   +GS          K+WIG+TE    L +  G+++R++
Sbjct: 161 KFDTLGSSHFHNKVYGAKKWIGTTECAALLRS-FGLRARVV 200


>12_02_0460 + 19360075-19360320,19361189-19361368
          Length = 141

 Score = 31.1 bits (67), Expect = 3.6
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 409 IAGVKNSLQNKRKKIASGQVSFHIDSTQVYLFGVASDVGLTGTSTEATVGELVDSMSPE 467
           ++ + N L+   K IASG+ +     T ++L  +A DVG+T       +  LV++ +PE
Sbjct: 52  VSFIANKLETIWKGIASGEYTNFSLKTTLFLCSLAEDVGVT-PHVVLVIAGLVEACAPE 109


>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 74  PDLGFLITNVELPALCSSKYRPGPPSDYAQ 103
           P + F +T+  L A  +   RPGPPS  AQ
Sbjct: 4   PTVPFFLTSTTLAAAAAKPQRPGPPSPPAQ 33


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,065,568
Number of Sequences: 37544
Number of extensions: 967252
Number of successful extensions: 1996
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1986
Number of HSP's gapped (non-prelim): 7
length of query: 805
length of database: 14,793,348
effective HSP length: 88
effective length of query: 717
effective length of database: 11,489,476
effective search space: 8237954292
effective search space used: 8237954292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)