Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001188-TA|BGIBMGA001188-PA|IPR001247|Exoribonuclease,
IPR012462|Protein of unknown function DUF1671
(805 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.) 226 5e-59
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 5e-13
SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2) 53 8e-07
SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26) 50 7e-06
SB_23511| Best HMM Match : Abhydrolase_1 (HMM E-Value=2.7e-12) 48 3e-05
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 35 0.30
SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.91
SB_4495| Best HMM Match : DUF1671 (HMM E-Value=3.5e-21) 33 1.2
SB_24363| Best HMM Match : COesterase (HMM E-Value=1.7e-16) 32 1.6
SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41) 31 2.8
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 31 3.7
SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38) 30 6.4
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.5
>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 226 bits (553), Expect = 5e-59
Identities = 100/153 (65%), Positives = 119/153 (77%)
Query: 605 IQASKSDVTVALVRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHK 664
I S D TV LV G+Y+YHHYMQD FNDDGWGCAYRS+QTI SWFR+QGYT P+H
Sbjct: 477 IVKSTPDGTVELVDGKYSYHHYMQDGFNDDGWGCAYRSLQTICSWFRHQGYTSKPAPSHH 536
Query: 665 EIQQCLVKIGDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVH 724
EIQQ LV IGDK+ FIGSKQWIGS EV CLE LLGV S+I++ N+G ++ S +L+H
Sbjct: 537 EIQQALVDIGDKKDNFIGSKQWIGSFEVSMCLEHLLGVTSKILYVNSGADMASKGRDLLH 596
Query: 725 HFQTHGSPIMIGGGVLAHTILGIEYNSITNETR 757
HFQT G+PIMIGGGVLAHTI+G++YN T + R
Sbjct: 597 HFQTQGTPIMIGGGVLAHTIIGVDYNLQTGDIR 629
Score = 41.9 bits (94), Expect = 0.002
Identities = 72/299 (24%), Positives = 129/299 (43%), Gaps = 32/299 (10%)
Query: 296 VGFSLESFETETEKNSYSQLLLNFPAEIELCGV-VKFGETLTTD--STTKEILQDVD--I 350
+ SL S +++ YS + P I +CGV + + L D S+TK +L D+ I
Sbjct: 49 ISSSLSSSSSDSWLVDYSDVASLIPEGIHVCGVYISSPKHLKLDHPSSTK-VLNDLSAKI 107
Query: 351 TD--NPLIIIINR-EKDMKAHFIVHD----KFEETKYEVFS-PEELWKQFLHVRLNT--V 400
+D +P+I + + K + V+D + E E S P L QFL R+
Sbjct: 108 SDEASPMICVWQHCSEGNKDYGYVYDITTSRITECTIEFSSSPTALLSQFLTFRIQASFT 167
Query: 401 LPLRCEATIAG--VKNSLQNKRKKIASGQVSFHIDSTQVYLFGVASDVGLTGTSTEATVG 458
+ + C+ A + + +Q+ K + SG F++ + L + ++ V
Sbjct: 168 VCISCKKAQAKDVLSSEIQSLCKDVRSGTTIFYLPDCHMMLQAPEEITKARTDTCQSVVT 227
Query: 459 ELV----DSMSPEQPSKKKKY-------NINNAEILPVSLI-LKVTKDILSDKLVKTAVK 506
+ D+ SP+ K K NI+N + +I +KV + I D V
Sbjct: 228 AMATIEQDNSSPQGSKKSNKMKKNDTLRNIDNKDFKIKDVIDVKVLRKITPDTK-DGFVP 286
Query: 507 MMTTQRKPAFYISMPLRIDTLAMIHRNTKLLDLYIVLVEAACRSLRLMESVLIEQLEKE 565
++ +++ +++ L ID +AM+ +T L L + A CR L+ + V E+ KE
Sbjct: 287 VLQYRKESGRTVAIQLPIDAVAMVMLSTSLDSLPKLFSSAVCRQLKQLGRV-AEKFSKE 344
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 73.7 bits (173), Expect = 5e-13
Identities = 38/161 (23%), Positives = 78/161 (48%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITN 82
R DGR+ +++R ++ + SA ++ +T ++ G+K E+ P P G +
Sbjct: 23 RSDGRSCEDYRYFEVETGIVSNTSGSARLRLSDTDILVGVKAEIGEPNLLTPGCGRVEFF 82
Query: 83 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 142
V+ + S ++ D A + + N IDL L I+ + WV+Y D + +
Sbjct: 83 VDCSSNASVEFNGRSGDDLAADLMRSLDRTYSNKSAIDLSSLSIIHGQQCWVLYVDTLVL 142
Query: 143 DHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVETNE 183
+ G+L DA +A+ A+ +P+V ++ E+++E ++
Sbjct: 143 ECGGNLYDALSLAVKAALYNTRIPNVTVSSDGGEVELEISD 183
>SB_52626| Best HMM Match : DUF437 (HMM E-Value=3.2)
Length = 267
Score = 53.2 bits (122), Expect = 8e-07
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 88 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 147
+ S + G S+ +N V S+ ID + LCIV + W V D+ +DH G+
Sbjct: 1 MASPAFEAGRMSELGVELNRFVERFYIESRAIDTESLCIVAGEKVWSVRVDIQVLDHSGN 60
Query: 148 LVD-ACIIAL--IASFKTLLLPSVNYDTETEEIKVETNERINLKIH 190
++D ACI A+ ++ F LLL N + EE ++ + + L IH
Sbjct: 61 ILDCACISAITALSHFSELLLVDPN---DKEEAVMDGHMMMALNIH 103
>SB_10833| Best HMM Match : RNase_PH_C (HMM E-Value=0.26)
Length = 184
Score = 50.0 bits (114), Expect = 7e-06
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 80 ITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKN 115
I NV+LP LCS +RPGPPS++AQV++ + +I N
Sbjct: 76 IPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLITN 111
>SB_23511| Best HMM Match : Abhydrolase_1 (HMM E-Value=2.7e-12)
Length = 518
Score = 48.0 bits (109), Expect = 3e-05
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 79 LITNVELPALCSSKYRPGPPSDYAQVINNIVSEII 113
++ NV+LP LCS +RPGPPS++AQV++ + +I
Sbjct: 482 VVPNVDLPPLCSPSFRPGPPSEHAQVLSTFIDNLI 516
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 34.7 bits (76), Expect = 0.30
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNT 56
R DGR FDE R+I ++N KT S++ K G T
Sbjct: 295 RCDGRQFDELRSIDCDINLYKTLHGSSLFKRGET 328
>SB_45399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 33.1 bits (72), Expect = 0.91
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 684 KQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPIMIGGGVLAH- 742
K W +V+ E + Q +IF L A L+H F+ HG+ + G G+L H
Sbjct: 468 KWWNNIKDVITKEEVIKAYQQSMIFM---ARLNRNAARLMHKFEAHGATDVTGFGILGHA 524
Query: 743 -TILGIEYNSITNETRYLILDPHYTGA 768
+ I+ N ++ + L + + T A
Sbjct: 525 RNLAAIQRNKVSFQLHTLPILANMTEA 551
>SB_4495| Best HMM Match : DUF1671 (HMM E-Value=3.5e-21)
Length = 233
Score = 32.7 bits (71), Expect = 1.2
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 681 IGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPIM--IGGG 738
I +++WIG+TE+ L + LG+++++I + T PE+ + + S + GGG
Sbjct: 62 INTRKWIGATEIAAVLRS-LGIRTKLIDFHRATGCDGTHPEMFSWIKRYFSCLTPGFGGG 120
Query: 739 VLA 741
LA
Sbjct: 121 SLA 123
>SB_24363| Best HMM Match : COesterase (HMM E-Value=1.7e-16)
Length = 635
Score = 32.3 bits (70), Expect = 1.6
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 260 LAEQHTIAVEKRLSKIDTTESTGCLYGLMYDGTLLVVGFSL-ESFETETEKNSYSQLLLN 318
++E + + +E +++ T S YG+ Y GT FSL + E N+Y+
Sbjct: 259 VSEANVVRIESGMARGGTKGSANVYYGIPYAGT--TKRFSLPQPLLPTNETNNYTMANPK 316
Query: 319 FPAEIELCGVVKFGETLTTDSTTKEILQDVDITDNPLIIII 359
+ A+ EL + F T D T + D +N + ++
Sbjct: 317 YCAQFELKEGLPFDVNSTEDCLTLNVHTPHDANENSSLPVL 357
>SB_35904| Best HMM Match : RNase_PH (HMM E-Value=4.39994e-41)
Length = 247
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGI 62
R+DGR E R + V + AD SA ++ GNT + +
Sbjct: 13 RIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATV 52
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 31.1 bits (67), Expect = 3.7
Identities = 39/167 (23%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 423 IASGQVSFHI-DSTQVYLFGVASDV--------GLTGTSTEATVGELVDSMSPEQPSKKK 473
+ SG V H DS + LF + +V G+ T+T+A + +S + +
Sbjct: 2456 LVSGFVCVHAWDSVDLELFDIVEEVKDNFYQVLGVETTATQAEIRRAYRRISLQLHPDRN 2515
Query: 474 KYNINNAEILPVSLILKVTKDILSDKLVKTAVKM-MTTQRKPAFYISMPLRIDTLAMIHR 532
K + + + + +V KD K T ++ M R+P +Y ++ + +
Sbjct: 2516 KEDDAELKFRKLVAVAEVLKDEDKRKRYDTILRDGMPDWRQPVYYYRRVRKMGLVEFVIL 2575
Query: 533 NTKLLDL--YIVL----VEAACRSLRLMESVLIEQLEKERRTLHEQL 573
+L + YIV +E L+ ++S +EQ +K RR LH +L
Sbjct: 2576 LFFILTIGHYIVAWSIYLEKKFELLKSVKSDFVEQPKKPRRRLHVEL 2622
>SB_22206| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-38)
Length = 362
Score = 30.3 bits (65), Expect = 6.4
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 475 YNINNAEILPVSLILKVTKDILSDKLVKTAVKMMTTQRKPAFYISMPLRIDTLA-MIHRN 533
Y+ A + P+S K+T+ ++ L+ M PAF+ S PL I LA I++
Sbjct: 121 YDRYQAIVHPLSYHAKMTRRTVNKILILVWTIPMVITLVPAFWYSQPLNIKKLANQINQG 180
Query: 534 T---KLLDLYIVLVEAACRSLRLMESVLIEQLEKERRTLHEQ--LGLPLHR 579
+ + +++ A C+ R + + E +L Q LG HR
Sbjct: 181 LLVFSITAISVIICMAYCKMFRETRHQIQKMAELRLESLSRQSSLGAGKHR 231
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.9 bits (64), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 9 HPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSI 42
HPV H ND +KT RN D+ I N ++
Sbjct: 79 HPVSHVNDAFDLKTFWKSRNVDQPVFIDFNFGAV 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,747,642
Number of Sequences: 59808
Number of extensions: 1108171
Number of successful extensions: 2613
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2600
Number of HSP's gapped (non-prelim): 17
length of query: 805
length of database: 16,821,457
effective HSP length: 88
effective length of query: 717
effective length of database: 11,558,353
effective search space: 8287339101
effective search space used: 8287339101
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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