Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001188-TA|BGIBMGA001188-PA|IPR001247|Exoribonuclease,
IPR012462|Protein of unknown function DUF1671
(805 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457278-1|CAG33559.1| 469|Homo sapiens FLJ11200 protein. 314 8e-85
BC010493-1|AAH10493.1| 469|Homo sapiens chromosome 4 open readi... 314 8e-85
AK002062-1|BAA92064.1| 469|Homo sapiens protein ( Homo sapiens ... 312 2e-84
BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8 pro... 235 6e-61
AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein... 232 3e-60
AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein. 230 1e-59
AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderm... 128 1e-28
AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderm... 128 1e-28
D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein. 105 5e-22
BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7 pro... 105 5e-22
U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen pro... 92 6e-18
M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein. 92 6e-18
AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein. 92 6e-18
BC067904-1|AAH67904.1| 142|Homo sapiens similar to RIKEN cDNA 2... 83 4e-15
AF312032-2|AAK21004.1| 142|Homo sapiens unknown protein. 83 5e-15
BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide nucl... 34 1.7
AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease p... 34 1.7
AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens ... 34 1.7
AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide phosphor... 34 1.7
AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein. 34 1.7
BX537872-1|CAD97873.1| 578|Homo sapiens hypothetical protein pr... 34 2.3
BC016879-1|AAH16879.1| 578|Homo sapiens chromosome 6 open readi... 34 2.3
AL132795-3|CAI20498.1| 578|Homo sapiens RP3-412I7.3 protein. 34 2.3
AK054582-1|BAB70765.1| 578|Homo sapiens protein ( Homo sapiens ... 33 3.0
X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3... 32 9.3
BX641155-1|CAE46068.1| 558|Homo sapiens hypothetical protein pr... 32 9.3
BC071564-1|AAH71564.1| 1224|Homo sapiens bromodomain and WD repe... 32 9.3
BC040469-1|AAH40469.1| 1224|Homo sapiens bromodomain and WD repe... 32 9.3
BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, ty... 32 9.3
AL391425-1|CAH72488.1| 1224|Homo sapiens WD repeat domain 11 pro... 32 9.3
AK001368-1|BAA91652.1| 864|Homo sapiens protein ( Homo sapiens ... 32 9.3
AK000579-1|BAA91269.1| 515|Homo sapiens protein ( Homo sapiens ... 32 9.3
AF320223-1|AAK08064.1| 1224|Homo sapiens WD40 repeat domain 11 p... 32 9.3
AC112715-1|AAY14906.1| 588|Homo sapiens unknown protein. 32 9.3
AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collage... 32 9.3
AB037772-1|BAA92589.2| 1243|Homo sapiens KIAA1351 protein protein. 32 9.3
>CR457278-1|CAG33559.1| 469|Homo sapiens FLJ11200 protein.
Length = 469
Score = 314 bits (771), Expect = 8e-85
Identities = 138/247 (55%), Positives = 182/247 (73%), Gaps = 6/247 (2%)
Query: 561 QLEKERRTLHEQLGLPLHRPVFRRGNA--FIDK--SGGYLVNPHEAMPIQASKSDVTVAL 616
QL+ R+ LH+ LP RP F+R NA F D+ GY+ NPH + ++ + + +
Sbjct: 222 QLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGM-IYV 280
Query: 617 VRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKIGDK 676
V+G Y YHHYMQD +D+GWGCAYRS+QTI SWF++QGYT+ +PTH+EIQQ LV GDK
Sbjct: 281 VQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDK 340
Query: 677 QSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPIMIG 736
+TF+GS+QWIGS EV L L+G+ S+I+F + G+E+ S EL +HFQ+ G+P+MIG
Sbjct: 341 PATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIG 400
Query: 737 GGVLAHTILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNL 796
GGVLAHTILG+ +N IT + ++LILDPHYTGAED+ ++ KGWCGWK DFWNK A+YNL
Sbjct: 401 GGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGWKGPDFWNKDAYYNL 460
Query: 797 CLPQTRP 803
CLPQ RP
Sbjct: 461 CLPQ-RP 466
>BC010493-1|AAH10493.1| 469|Homo sapiens chromosome 4 open reading
frame 20 protein.
Length = 469
Score = 314 bits (771), Expect = 8e-85
Identities = 138/247 (55%), Positives = 182/247 (73%), Gaps = 6/247 (2%)
Query: 561 QLEKERRTLHEQLGLPLHRPVFRRGNA--FIDK--SGGYLVNPHEAMPIQASKSDVTVAL 616
QL+ R+ LH+ LP RP F+R NA F D+ GY+ NPH + ++ + + +
Sbjct: 222 QLQAYRKELHDLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGM-IYV 280
Query: 617 VRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKIGDK 676
V+G Y YHHYMQD +D+GWGCAYRS+QTI SWF++QGYT+ +PTH+EIQQ LV GDK
Sbjct: 281 VQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDK 340
Query: 677 QSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPIMIG 736
+TF+GS+QWIGS EV L L+G+ S+I+F + G+E+ S EL +HFQ+ G+P+MIG
Sbjct: 341 PATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIG 400
Query: 737 GGVLAHTILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNL 796
GGVLAHTILG+ +N IT + ++LILDPHYTGAED+ ++ KGWCGWK DFWNK A+YNL
Sbjct: 401 GGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGWKGPDFWNKDAYYNL 460
Query: 797 CLPQTRP 803
CLPQ RP
Sbjct: 461 CLPQ-RP 466
>AK002062-1|BAA92064.1| 469|Homo sapiens protein ( Homo sapiens
cDNA FLJ11200 fis, clone PLACE1007725. ).
Length = 469
Score = 312 bits (767), Expect = 2e-84
Identities = 138/247 (55%), Positives = 181/247 (73%), Gaps = 6/247 (2%)
Query: 561 QLEKERRTLHEQLGLPLHRPVFRRGNA--FIDK--SGGYLVNPHEAMPIQASKSDVTVAL 616
QL+ R+ LH LP RP F+R NA F D+ GY+ NPH + ++ + + +
Sbjct: 222 QLQAYRKELHGLFNLPHDRPYFKRSNAYHFPDEPYKDGYIRNPHTYLNPPNMETGM-IYV 280
Query: 617 VRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKIGDK 676
V+G Y YHHYMQD +D+GWGCAYRS+QTI SWF++QGYT+ +PTH+EIQQ LV GDK
Sbjct: 281 VQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQALVDAGDK 340
Query: 677 QSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPIMIG 736
+TF+GS+QWIGS EV L L+G+ S+I+F + G+E+ S EL +HFQ+ G+P+MIG
Sbjct: 341 PATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSEGTPVMIG 400
Query: 737 GGVLAHTILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNL 796
GGVLAHTILG+ +N IT + ++LILDPHYTGAED+ ++ KGWCGWK DFWNK A+YNL
Sbjct: 401 GGVLAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVILEKGWCGWKGPDFWNKDAYYNL 460
Query: 797 CLPQTRP 803
CLPQ RP
Sbjct: 461 CLPQ-RP 466
>BC020773-1|AAH20773.1| 276|Homo sapiens exosome component 8
protein.
Length = 276
Score = 235 bits (574), Expect = 6e-61
Identities = 109/275 (39%), Positives = 171/275 (62%), Gaps = 6/275 (2%)
Query: 1 MSEVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVC 60
M+ +K + P++++ ++ R DGR E R +N+ SI TAD SA+VK GNTTV+C
Sbjct: 1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC 60
Query: 61 GIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCID 120
G+K E A P + PD G+++ NV+LP LCSS++R GPP + AQV + ++++I+NS+ I
Sbjct: 61 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQ 120
Query: 121 LKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVE 180
+DLCI P KL WV+YCD++C+D+DG+++DAC AL+A+ K + LP V + ET +V
Sbjct: 121 KEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN 180
Query: 181 TNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCG 240
++ L I PVATSFAV++ +L+ DPT EE + G+ I+ +G LC
Sbjct: 181 LKKKSYLNIRTHPVATSFAVFD----DTLLIVDPTGEEEHL--ATGTLTIVMDEEGKLCC 234
Query: 241 IQKLGGGSLSTENNEEAIRLAEQHTIAVEKRLSKI 275
+ K GG L+ ++ + A V+K + ++
Sbjct: 235 LHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEV 269
>AF025438-1|AAC39558.1| 265|Homo sapiens Opa-interacting protein
OIP2 protein.
Length = 265
Score = 232 bits (568), Expect = 3e-60
Identities = 108/266 (40%), Positives = 166/266 (62%), Gaps = 6/266 (2%)
Query: 5 YKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKL 64
+K + P++++ ++ R DGR E R +N+ SI TAD SA+VK GNTTV+CG+K
Sbjct: 3 FKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKA 62
Query: 65 ELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDL 124
E A P + PD G+++ NV+LP LCSS++R GPP + AQV + ++++I+NS+ I +DL
Sbjct: 63 EFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDL 122
Query: 125 CIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVETNER 184
CI P KL WV+YCD++C+D+DG+++DAC AL+A+ K + LP V + ET +V ++
Sbjct: 123 CISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVNLKKK 182
Query: 185 INLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQKL 244
L I PVATSFAV++ +L+ DPT EE + G+ I+ +G LC + K
Sbjct: 183 SYLNIRTHPVATSFAVFD----DTLLIVDPTGEEEHL--ATGTLTIVMDEEGKLCCLHKP 236
Query: 245 GGGSLSTENNEEAIRLAEQHTIAVEK 270
GG L+ ++ + A V+K
Sbjct: 237 GGSGLTGAKLQDCMSRAVTRHKEVKK 262
>AL138706-8|CAI14013.1| 275|Homo sapiens RP11-421P11.3 protein.
Length = 275
Score = 230 bits (563), Expect = 1e-59
Identities = 109/275 (39%), Positives = 170/275 (61%), Gaps = 7/275 (2%)
Query: 1 MSEVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVC 60
M+ +K + P++++ ++ R DGR E R +N+ SI TAD SA+VK GNTTV+C
Sbjct: 1 MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVIC 60
Query: 61 GIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCID 120
G+K E A P + PD G+++ NV+LP LCSS++R GPP + AQV + ++++I+NS+ I
Sbjct: 61 GVKAEFAAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQ 120
Query: 121 LKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTETEEIKVE 180
+DLCI P KL WV+YCD++C+D+DG+++DAC AL+A+ K + LP V + ET +V
Sbjct: 121 KEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAEVN 180
Query: 181 TNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCG 240
++ L I PVATSFAV++ +L+ DPT EE + G+ I+ +G LC
Sbjct: 181 LKKKSYLNIRTHPVATSFAVFD----DTLLIVDPTGEEEHL--ATGTLTIVMDEEGKLCC 234
Query: 241 IQKLGGGSLSTENNEEAIRLAEQHTIAVEKRLSKI 275
+ K G G + + R +H V+K + ++
Sbjct: 235 LHKPGIGLTGAKLQDCMSRAVTRHK-EVKKLMDEV 268
>AJ517294-1|CAD56889.1| 456|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 456
Score = 128 bits (308), Expect = 1e-28
Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 11/231 (4%)
Query: 18 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLG 77
I K RLDGR ++RNI++ S T +V+ G T V+ + EL PK G
Sbjct: 18 IEEKKRLDGRQTYDYRNIRI---SFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG 74
Query: 78 FLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYC 137
L N+EL + + + PG SD +N ++ ++NSKCID + LC+V + W +
Sbjct: 75 ILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRV 134
Query: 138 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVAT 196
D+ ++HDG+++DA IA I + P V+ E E + + L IH +P+
Sbjct: 135 DLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICV 194
Query: 197 SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKLGG 246
SFA FQ LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 195 SFA---FFQQGTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 239
>AJ505989-1|CAD44530.1| 439|Homo sapiens polymyositis/scleroderma
autoantigen 1 protein.
Length = 439
Score = 128 bits (308), Expect = 1e-28
Identities = 78/231 (33%), Positives = 115/231 (49%), Gaps = 11/231 (4%)
Query: 18 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLG 77
I K RLDGR ++RNI++ S T +V+ G T V+ + EL PK G
Sbjct: 18 IEEKKRLDGRQTYDYRNIRI---SFGTDYGCCIVELGKTRVLGQVSCELVSPKLNRATEG 74
Query: 78 FLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYC 137
L N+EL + + + PG SD +N ++ ++NSKCID + LC+V + W +
Sbjct: 75 ILFFNLELSQMAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRV 134
Query: 138 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVAT 196
D+ ++HDG+++DA IA I + P V+ E E + + L IH +P+
Sbjct: 135 DLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICV 194
Query: 197 SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKLGG 246
SFA FQ LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 195 SFA---FFQQGTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 239
>D29958-1|BAA06226.1| 290|Homo sapiens KIAA0116 protein.
Length = 290
Score = 105 bits (253), Expect = 5e-22
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 16/238 (6%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITN 82
R+DGR +++R +++ + + SA VK G+T ++ G+K E+ PK E+P+ G+L
Sbjct: 22 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFF 81
Query: 83 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 142
V+ A + ++ D I N + I N +DLK LCI P + WV+Y D++ +
Sbjct: 82 VDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLL 141
Query: 143 DHDGSLVDACIIALIASFKTLLLPSVNYDTETE-----EIKVETNERINLKIHGLPVATS 197
+ G+L DA IA+ A+ +P V + E E+ + + I L + +P +
Sbjct: 142 ECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVT 201
Query: 198 FAV--YEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQKLGGGSLSTEN 253
Y H + D T +EE C S L+ +KG++ ++K+G GSL E+
Sbjct: 202 LCKIGYRH-------VVDAT-LQEEAC-SLASLLVSVTSKGVVTCMRKVGKGSLDPES 250
>BC012831-1|AAH12831.1| 291|Homo sapiens exosome component 7
protein.
Length = 291
Score = 105 bits (253), Expect = 5e-22
Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 16/238 (6%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITN 82
R+DGR +++R +++ + + SA VK G+T ++ G+K E+ PK E+P+ G+L
Sbjct: 23 RVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTPKLEKPNEGYLEFF 82
Query: 83 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCI 142
V+ A + ++ D I N + I N +DLK LCI P + WV+Y D++ +
Sbjct: 83 VDCSASATPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLL 142
Query: 143 DHDGSLVDACIIALIASFKTLLLPSVNYDTETE-----EIKVETNERINLKIHGLPVATS 197
+ G+L DA IA+ A+ +P V + E E+ + + I L + +P +
Sbjct: 143 ECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSKDIELSDDPYDCIRLSVENVPCIVT 202
Query: 198 FAV--YEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQKLGGGSLSTEN 253
Y H + D T +EE C S L+ +KG++ ++K+G GSL E+
Sbjct: 203 LCKIGYRH-------VVDAT-LQEEAC-SLASLLVSVTSKGVVTCMRKVGKGSLDPES 251
>U09215-1|AAA18832.1| 372|Homo sapiens PM-Scl-75 autoantigen
protein.
Length = 372
Score = 92.3 bits (219), Expect = 6e-18
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 88 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 147
+ + + PG SD +N ++ ++NSKCID + LC+V + W + D+ ++HDG+
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 148 LVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVATSFAVYEHFQS 206
++DA IA I + P V+ E E + + L IH +P+ SFA FQ
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFA---FFQQ 117
Query: 207 QIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKLGG 246
LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 118 GTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 155
>M58460-1|AAA58384.1| 355|Homo sapiens autoantigen protein.
Length = 355
Score = 92.3 bits (219), Expect = 6e-18
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 88 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 147
+ + + PG SD +N ++ ++NSKCID + LC+V + W + D+ ++HDG+
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 148 LVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVATSFAVYEHFQS 206
++DA IA I + P V+ E E + + L IH +P+ SFA FQ
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFA---FFQQ 117
Query: 207 QIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKLGG 246
LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 118 GTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 155
>AC079341-2|AAY40968.1| 355|Homo sapiens unknown protein.
Length = 355
Score = 92.3 bits (219), Expect = 6e-18
Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 8/161 (4%)
Query: 88 LCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLKDLCIVPDKLAWVVYCDMVCIDHDGS 147
+ + + PG SD +N ++ ++NSKCID + LC+V + W + D+ ++HDG+
Sbjct: 1 MAAPAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGN 60
Query: 148 LVDACIIALIASFKTLLLPSVNYD-TETEEIKVETNERINLKIHGLPVATSFAVYEHFQS 206
++DA IA I + P V+ E E + + L IH +P+ SFA FQ
Sbjct: 61 IIDAASIAAIVALCHFRRPDVSVQGDEVTLYTPEERDPVPLSIHHMPICVSFA---FFQQ 117
Query: 207 QIILLTDPTNYEEEMCGGNGSNLIISYNKGL-LCGIQKLGG 246
LL DP EE + G L+I+ NK +C IQ GG
Sbjct: 118 GTYLLVDPNEREERVMDG---LLVIAMNKHREICTIQSSGG 155
>BC067904-1|AAH67904.1| 142|Homo sapiens similar to RIKEN cDNA
2700038N03 protein.
Length = 142
Score = 83.0 bits (196), Expect = 4e-15
Identities = 48/130 (36%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 673 IGDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSP 732
+GDK F GS+ WIG E CL G Q R+ G L L HF G P
Sbjct: 1 MGDKPPGFRGSRDWIGCVEASLCLAHFGGPQGRLCHVPRGVGLHGEVERLYSHFAGGGGP 60
Query: 733 IMIGGGVLAHT--ILGIEYNSITNETRYLILDPHYTGAEDITTVIN-KGWCGWKS-SDFW 788
+M+GG A + +LG+ S T E L+LDPHY G + + GW GW+ S +
Sbjct: 61 VMVGGDADARSKALLGVCVGSGT-EAYVLVLDPHYWGTPKSPSELQAAGWVGWQEVSAAF 119
Query: 789 NKTAHYNLCL 798
+ + YNLCL
Sbjct: 120 DPNSFYNLCL 129
>AF312032-2|AAK21004.1| 142|Homo sapiens unknown protein.
Length = 142
Score = 82.6 bits (195), Expect = 5e-15
Identities = 48/130 (36%), Positives = 63/130 (48%), Gaps = 5/130 (3%)
Query: 673 IGDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSP 732
+GDK F GS+ WIG E CL G Q R+ G L L HF G P
Sbjct: 1 MGDKPPGFRGSRDWIGCVEASLCLAHFGGPQGRLCHVPRGVGLHGELERLYSHFAGGGGP 60
Query: 733 IMIGGGVLAHT--ILGIEYNSITNETRYLILDPHYTGAEDITTVIN-KGWCGWKS-SDFW 788
+M+GG A + +LG+ S T E L+LDPHY G + + GW GW+ S +
Sbjct: 61 VMVGGDADARSKALLGVCVGSGT-EAYVLVLDPHYWGTPKSPSELQAAGWVGWQEVSAAF 119
Query: 789 NKTAHYNLCL 798
+ + YNLCL
Sbjct: 120 DPNSFYNLCL 129
>BC053660-1|AAH53660.1| 783|Homo sapiens polyribonucleotide
nucleotidyltransferase 1 protein.
Length = 783
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLE 65
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AY027528-1|AAK13047.1| 783|Homo sapiens 3'-5' RNA exonuclease
protein.
Length = 783
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLE 65
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AK027437-1|BAB55109.1| 504|Homo sapiens protein ( Homo sapiens
cDNA FLJ14531 fis, clone NT2RM2000371, weakly similar to
POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE (EC 2.7.7.8).
).
Length = 504
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLE 65
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AJ458465-1|CAD30289.1| 783|Homo sapiens polynucleotide
phosphorylase-like protein protein.
Length = 783
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLE 65
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>AC015982-3|AAY24271.1| 783|Homo sapiens unknown protein.
Length = 783
Score = 34.3 bits (75), Expect = 1.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLE 65
R DGR+ RN+ V+ KT SA+ + G T V+C + +
Sbjct: 358 RCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFD 400
>BX537872-1|CAD97873.1| 578|Homo sapiens hypothetical protein
protein.
Length = 578
Score = 33.9 bits (74), Expect = 2.3
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 626 YMQDNFNDDGWGCAYRSMQTIFS-WFRYQGYTD----VEVPTHKEIQQCLV---KIG-DK 676
+ + D GWGC YR+ Q + S + Y D + +P +IQ + K G D
Sbjct: 348 HFHSSLGDKGWGCGYRNFQMLLSSLLQNDAYNDCLKGMLIPCIPKIQSMIEDAWKEGFDP 407
Query: 677 QST------FIGSKQWIGSTEVMFCLETLLGVQSRII 707
Q G+K WIG+ EV + L T L V+ I+
Sbjct: 408 QGASQLNNRLQGTKAWIGACEV-YILLTSLRVKCHIV 443
>BC016879-1|AAH16879.1| 578|Homo sapiens chromosome 6 open reading
frame 113 protein.
Length = 578
Score = 33.9 bits (74), Expect = 2.3
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 626 YMQDNFNDDGWGCAYRSMQTIFS-WFRYQGYTD----VEVPTHKEIQQCLV---KIG-DK 676
+ + D GWGC YR+ Q + S + Y D + +P +IQ + K G D
Sbjct: 348 HFHSSLGDKGWGCGYRNFQMLLSSLLQNDAYNDCLKGMLIPCIPKIQSMIEDAWKEGFDP 407
Query: 677 QST------FIGSKQWIGSTEVMFCLETLLGVQSRII 707
Q G+K WIG+ EV + L T L V+ I+
Sbjct: 408 QGASQLNNRLQGTKAWIGACEV-YILLTSLRVKCHIV 443
>AL132795-3|CAI20498.1| 578|Homo sapiens RP3-412I7.3 protein.
Length = 578
Score = 33.9 bits (74), Expect = 2.3
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 626 YMQDNFNDDGWGCAYRSMQTIFS-WFRYQGYTD----VEVPTHKEIQQCLV---KIG-DK 676
+ + D GWGC YR+ Q + S + Y D + +P +IQ + K G D
Sbjct: 348 HFHSSLGDKGWGCGYRNFQMLLSSLLQNDAYNDCLKGMLIPCIPKIQSMIEDAWKEGFDP 407
Query: 677 QST------FIGSKQWIGSTEVMFCLETLLGVQSRII 707
Q G+K WIG+ EV + L T L V+ I+
Sbjct: 408 QGASQLNNRLQGTKAWIGACEV-YILLTSLRVKCHIV 443
>AK054582-1|BAB70765.1| 578|Homo sapiens protein ( Homo sapiens
cDNA FLJ30020 fis, clone 3NB692000912. ).
Length = 578
Score = 33.5 bits (73), Expect = 3.0
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 626 YMQDNFNDDGWGCAYRSMQTIFS-WFRYQGYTD----VEVPTHKEIQQCLV---KIG-DK 676
+ + D GWGC YR+ Q + S + Y D + +P +IQ + K G D
Sbjct: 348 HFHSSLGDKGWGCGYRNFQMLLSSLLQNDAYDDCLKGMLIPCIPKIQSMIEDAWKEGFDP 407
Query: 677 QST------FIGSKQWIGSTEVMFCLETLLGVQSRII 707
Q G+K WIG+ EV + L T L V+ I+
Sbjct: 408 QGASQLNNRLQGTKAWIGACEV-YILLTSLRVKCHIV 443
>X52022-1|CAA36267.1| 3176|Homo sapiens collagen type VI, alpha 3
chain protein.
Length = 3176
Score = 31.9 bits (69), Expect = 9.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 473 KKYNI-NNAEILPVSLILKVTKDILSDKLVKTAVKMMTTQRKPAFYISMP 521
K+ N+ NN P S + TK + + K V T K +TT KP I+ P
Sbjct: 2854 KQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQP 2903
>BX641155-1|CAE46068.1| 558|Homo sapiens hypothetical protein
protein.
Length = 558
Score = 31.9 bits (69), Expect = 9.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 473 KKYNI-NNAEILPVSLILKVTKDILSDKLVKTAVKMMTTQRKPAFYISMP 521
K+ N+ NN P S + TK + + K V T K +TT KP I+ P
Sbjct: 235 KQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQP 284
>BC071564-1|AAH71564.1| 1224|Homo sapiens bromodomain and WD repeat
domain containing 2 protein.
Length = 1224
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 886 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 944
Query: 804 A 804
A
Sbjct: 945 A 945
>BC040469-1|AAH40469.1| 1224|Homo sapiens bromodomain and WD repeat
domain containing 2 protein.
Length = 1224
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 886 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 944
Query: 804 A 804
A
Sbjct: 945 A 945
>BC033174-1|AAH33174.1| 979|Homo sapiens Similar to collagen, type
VI, alpha 3 protein.
Length = 979
Score = 31.9 bits (69), Expect = 9.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 473 KKYNI-NNAEILPVSLILKVTKDILSDKLVKTAVKMMTTQRKPAFYISMP 521
K+ N+ NN P S + TK + + K V T K +TT KP I+ P
Sbjct: 656 KQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQP 705
>AL391425-1|CAH72488.1| 1224|Homo sapiens WD repeat domain 11
protein.
Length = 1224
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 886 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 944
Query: 804 A 804
A
Sbjct: 945 A 945
>AK001368-1|BAA91652.1| 864|Homo sapiens protein ( Homo sapiens
cDNA FLJ10506 fis, clone NT2RP2000510. ).
Length = 864
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 526 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 584
Query: 804 A 804
A
Sbjct: 585 A 585
>AK000579-1|BAA91269.1| 515|Homo sapiens protein ( Homo sapiens
cDNA FLJ20572 fis, clone REC01048. ).
Length = 515
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 177 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 235
Query: 804 A 804
A
Sbjct: 236 A 236
>AF320223-1|AAK08064.1| 1224|Homo sapiens WD40 repeat domain 11
protein protein.
Length = 1224
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 886 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 944
Query: 804 A 804
A
Sbjct: 945 A 945
>AC112715-1|AAY14906.1| 588|Homo sapiens unknown protein.
Length = 588
Score = 31.9 bits (69), Expect = 9.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 473 KKYNI-NNAEILPVSLILKVTKDILSDKLVKTAVKMMTTQRKPAFYISMP 521
K+ N+ NN P S + TK + + K V T K +TT KP I+ P
Sbjct: 265 KQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQP 314
>AB209636-1|BAD92873.1| 1702|Homo sapiens alpha 3 type VI collagen
isoform 5 precursor variant protein.
Length = 1702
Score = 31.9 bits (69), Expect = 9.3
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 473 KKYNI-NNAEILPVSLILKVTKDILSDKLVKTAVKMMTTQRKPAFYISMP 521
K+ N+ NN P S + TK + + K V T K +TT KP I+ P
Sbjct: 1379 KQVNVPNNVTSSPTSNPVTTTKPVTTTKPVTTTTKPVTTTTKPVTIINQP 1428
>AB037772-1|BAA92589.2| 1243|Homo sapiens KIAA1351 protein protein.
Length = 1243
Score = 31.9 bits (69), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 744 ILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSSDFWNKTAHYNLCLPQTRP 803
+L + NS++N+ + L+LDP +T + ++++ + FW AHY L Q +
Sbjct: 905 LLQEQLNSLSNDIKKLLLDPEFTLLQR-CLLVSRLYGDESELHFWTVAAHYLHSLSQEKS 963
Query: 804 A 804
A
Sbjct: 964 A 964
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,952,392
Number of Sequences: 224733
Number of extensions: 4940178
Number of successful extensions: 9375
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 9324
Number of HSP's gapped (non-prelim): 54
length of query: 805
length of database: 73,234,838
effective HSP length: 96
effective length of query: 709
effective length of database: 51,660,470
effective search space: 36627273230
effective search space used: 36627273230
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 69 (31.9 bits)
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