Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001188-TA|BGIBMGA001188-PA|IPR001247|Exoribonuclease,
IPR012462|Protein of unknown function DUF1671
(805 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48380.2 68416.m05281 expressed protein 253 4e-67
At3g48380.1 68416.m05280 expressed protein 253 4e-67
At1g60080.1 68414.m06769 3' exoribonuclease family domain 1-cont... 142 8e-34
At3g12990.1 68416.m01618 3' exoribonuclease family protein simil... 107 2e-23
At3g60500.2 68416.m06767 3' exoribonuclease family protein simil... 106 7e-23
At3g60500.1 68416.m06766 3' exoribonuclease family protein simil... 106 7e-23
At3g07750.2 68416.m00940 3' exoribonuclease family domain 1-cont... 77 5e-14
At3g07750.1 68416.m00939 3' exoribonuclease family domain 1-cont... 77 5e-14
At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to ... 42 0.002
At4g27490.1 68417.m03949 3' exoribonuclease family domain 1-cont... 33 0.57
At3g55640.1 68416.m06182 mitochondrial substrate carrier family ... 31 2.3
At5g41480.1 68418.m05037 dihydrofolate synthetase/folylpolygluta... 31 3.0
At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransfera... 31 4.0
At1g77855.1 68414.m09073 hypothetical protein 31 4.0
At1g51870.1 68414.m05847 protein kinase family protein contains ... 30 5.3
At2g29370.1 68415.m03568 tropinone reductase, putative / tropine... 29 9.2
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 9.2
>At3g48380.2 68416.m05281 expressed protein
Length = 640
Score = 253 bits (619), Expect = 4e-67
Identities = 121/256 (47%), Positives = 169/256 (66%), Gaps = 20/256 (7%)
Query: 566 RRTLHEQLGLPLHRPVFRRGNAF-----------IDKSGGYLVNP-HEAMPIQASKSDVT 613
R+ LH +LGLPL RP+ R NA +++ G L+ H +P + S+
Sbjct: 384 RKLLHLRLGLPLDRPLLRIANALDLSVNDDSKSNMNRRGSTLLKDVHIGIP-SSGVSEGV 442
Query: 614 VALVRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKI 673
++++G Y Y+HY+QD F+D GWGCAYRS+QTI SWFR Q YT + VP+H+EIQQ LV+I
Sbjct: 443 ASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSISVPSHREIQQTLVEI 502
Query: 674 GDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPI 733
GDK +F+GS++WIG+ E+ F L+ LLGV +I+ +G+EL EL HF+ G+PI
Sbjct: 503 GDKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPI 562
Query: 734 MIGGGVLAHTILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSS------DF 787
MIGGGVLA+T+LG++Y+ + + +LILDPHYTG+ED ++N GWCGWK + F
Sbjct: 563 MIGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGKSF 622
Query: 788 WNKTAHYNLCLPQTRP 803
+ YNL LPQ RP
Sbjct: 623 FLHNKFYNLLLPQ-RP 637
>At3g48380.1 68416.m05280 expressed protein
Length = 645
Score = 253 bits (619), Expect = 4e-67
Identities = 121/256 (47%), Positives = 169/256 (66%), Gaps = 20/256 (7%)
Query: 566 RRTLHEQLGLPLHRPVFRRGNAF-----------IDKSGGYLVNP-HEAMPIQASKSDVT 613
R+ LH +LGLPL RP+ R NA +++ G L+ H +P + S+
Sbjct: 389 RKLLHLRLGLPLDRPLLRIANALDLSVNDDSKSNMNRRGSTLLKDVHIGIP-SSGVSEGV 447
Query: 614 VALVRGRYAYHHYMQDNFNDDGWGCAYRSMQTIFSWFRYQGYTDVEVPTHKEIQQCLVKI 673
++++G Y Y+HY+QD F+D GWGCAYRS+QTI SWFR Q YT + VP+H+EIQQ LV+I
Sbjct: 448 ASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSISVPSHREIQQTLVEI 507
Query: 674 GDKQSTFIGSKQWIGSTEVMFCLETLLGVQSRIIFANTGTELQSYAPELVHHFQTHGSPI 733
GDK +F+GS++WIG+ E+ F L+ LLGV +I+ +G+EL EL HF+ G+PI
Sbjct: 508 GDKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPI 567
Query: 734 MIGGGVLAHTILGIEYNSITNETRYLILDPHYTGAEDITTVINKGWCGWKSS------DF 787
MIGGGVLA+T+LG++Y+ + + +LILDPHYTG+ED ++N GWCGWK + F
Sbjct: 568 MIGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKKIVNGGWCGWKKAVDSKGKSF 627
Query: 788 WNKTAHYNLCLPQTRP 803
+ YNL LPQ RP
Sbjct: 628 FLHNKFYNLLLPQ-RP 642
>At1g60080.1 68414.m06769 3' exoribonuclease family domain
1-containing protein similar to SP|Q96B26 Exosome
complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA
processing protein 43) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 302
Score = 142 bits (344), Expect = 8e-34
Identities = 82/291 (28%), Positives = 156/291 (53%), Gaps = 24/291 (8%)
Query: 3 EVYKLIHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGI 62
+ ++ I P++ F ++S R DGR + R+ +N+ + TAD SA+ K G+TT++ I
Sbjct: 17 DAFRRIFPLRFFERHLSESLRPDGRQLGKARDTIVNLGLVSTADGSALAKIGSTTMLAAI 76
Query: 63 KLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCIDLK 122
++E+ P + PD G + +P +CS RPG P++ A VI+ +S+ I +S IDLK
Sbjct: 77 RMEVMTPSTDSPDEGCIAIEFHMPPICSPTVRPGRPAEAAPVISKRLSDTILSSGMIDLK 136
Query: 123 DLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLP-----------SVNYD 171
+LC+V K AW+ Y D+ C+D DG+L DA ++A +A+F L +P +V +
Sbjct: 137 ELCLVSGKAAWMGYLDIYCLDADGALFDAALLAAVAAFSNLQIPIVALNDNGRIVAVTGE 196
Query: 172 TETEEIKVETNERIN-----LKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNG 226
+ + + E +N L + +P + + +++++ +L DPT EE +
Sbjct: 197 KDQDNALITEKEAVNKEKRKLTLKNIPFSLTCILHKNY-----ILADPTTEEESIMDTLV 251
Query: 227 SNLIISYNKGLLCGIQKLGGGSLSTENN-EEAIRLAEQHTIAVEKRLSKID 276
+ ++ S ++ + K GG +L+ + + + LA + +++ L ++D
Sbjct: 252 TVVLDSSDQ--MVSFYKSGGAALAYSSAIKSCVELARKRAKELKQILGEMD 300
>At3g12990.1 68416.m01618 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 307
Score = 107 bits (258), Expect = 2e-23
Identities = 79/277 (28%), Positives = 130/277 (46%), Gaps = 17/277 (6%)
Query: 1 MSEVYKL-IHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVV 59
++ +++L ++ K + + R+DGR ++R KL + K +S V + G T V+
Sbjct: 5 LNNMWRLTVNESKFVESALQSELRVDGRGLYDYR--KLTIKFGKEYGSSQV-QLGQTHVM 61
Query: 60 CGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCI 119
+ +L P + P G E + + PG P + A + I+ ++ S+ +
Sbjct: 62 AFVTAQLVQPYKDRPSEGSFSIFTEFSPMADPSFEPGHPGESAVELGRIIDRALRESRAV 121
Query: 120 DLKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLP--SVNYDTETEEI 177
D + LC++ KL W V D+ +D+ G+LVDA +A +A+ T P +V D + I
Sbjct: 122 DTESLCVLAGKLVWSVRIDLHILDNGGNLVDAANVAALAALMTFRRPDCTVGGDNSQDVI 181
Query: 178 --KVETNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEE-MCGGNGSNLIISYN 234
E E + L IH LP+A +F F IL+ DPT EE MCG + ++ N
Sbjct: 182 IHPPEEREPLPLIIHHLPIAFTFG---FFNKGSILVMDPTYVEEAVMCG----RMTVTVN 234
Query: 235 -KGLLCGIQKLGGGSLSTENNEEAIRLAEQHTIAVEK 270
G +C IQK G ++ +RLA A K
Sbjct: 235 ANGDICAIQKPGEEGVNQSVILHCLRLASSRASATTK 271
>At3g60500.2 68416.m06767 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 106 bits (254), Expect = 7e-23
Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 17/277 (6%)
Query: 1 MSEVYKL-IHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVV 59
++ +++L ++ K + + R+DGR ++R KL + K +S V + G T V+
Sbjct: 5 LANMWRLTVNESKFVETALQSELRVDGRGLYDYR--KLTIKFGKEYGSSEV-QLGQTHVM 61
Query: 60 CGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCI 119
+ +L P + P+ G L E + + PG P + A + I+ ++ S+ +
Sbjct: 62 GFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAV 121
Query: 120 DLKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTET-EEI- 177
D + LC++ K+ W V D+ +D+ G+LVDA IA +A+ T P E +E+
Sbjct: 122 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVI 181
Query: 178 --KVETNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEE-MCGGNGSNLIISYN 234
+E E + L IH LP+A +F F I++ DPT EE MCG + ++ N
Sbjct: 182 IHPLEEREPLPLIIHHLPIAFTFG---FFNKGNIVVMDPTYVEEAVMCG----RMTVTVN 234
Query: 235 -KGLLCGIQKLGGGSLSTENNEEAIRLAEQHTIAVEK 270
G +C IQK G ++ +RLA A K
Sbjct: 235 ANGDICAIQKPGEEGVNQSVILHCLRLASSRAAATTK 271
>At3g60500.1 68416.m06766 3' exoribonuclease family protein similar
to SP|Q06265 Exosome complex exonuclease RRP45 [Homo
sapiens]; contains Pfam profiles PF01138: 3'
exoribonuclease family, domain 1, PF03725: 3'
exoribonuclease family, domain 2
Length = 438
Score = 106 bits (254), Expect = 7e-23
Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 17/277 (6%)
Query: 1 MSEVYKL-IHPVKHFNDYISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVV 59
++ +++L ++ K + + R+DGR ++R KL + K +S V + G T V+
Sbjct: 5 LANMWRLTVNESKFVETALQSELRVDGRGLYDYR--KLTIKFGKEYGSSEV-QLGQTHVM 61
Query: 60 CGIKLELAVPKAEEPDLGFLITNVELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKCI 119
+ +L P + P+ G L E + + PG P + A + I+ ++ S+ +
Sbjct: 62 GFVTAQLVQPYKDRPNEGSLSIFTEFSPMADPSFEPGRPGESAVELGRIIDRGLRESRAV 121
Query: 120 DLKDLCIVPDKLAWVVYCDMVCIDHDGSLVDACIIALIASFKTLLLPSVNYDTET-EEI- 177
D + LC++ K+ W V D+ +D+ G+LVDA IA +A+ T P E +E+
Sbjct: 122 DTESLCVLAGKMVWSVRIDLHILDNGGNLVDAANIAALAALMTFRRPDCTVGGENGQEVI 181
Query: 178 --KVETNERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEE-MCGGNGSNLIISYN 234
+E E + L IH LP+A +F F I++ DPT EE MCG + ++ N
Sbjct: 182 IHPLEEREPLPLIIHHLPIAFTFG---FFNKGNIVVMDPTYVEEAVMCG----RMTVTVN 234
Query: 235 -KGLLCGIQKLGGGSLSTENNEEAIRLAEQHTIAVEK 270
G +C IQK G ++ +RLA A K
Sbjct: 235 ANGDICAIQKPGEEGVNQSVILHCLRLASSRAAATTK 271
>At3g07750.2 68416.m00940 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 77.0 bits (181), Expect = 5e-14
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 24/267 (8%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITN 82
R DGR +R I + I A+ SA V+ G T V+ +K E+ P + +PD G +
Sbjct: 20 RTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGKVAVF 79
Query: 83 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKC-----IDLKDLCIVPDKLAWVVYC 137
++ + + + + + + K I+L L I K+ W +Y
Sbjct: 80 IDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCWDLYI 139
Query: 138 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNY-----DTETEEIKVETNERINLKIHGL 192
D + I DG+L+DA A+ A+ +P VN D E EI + E + +
Sbjct: 140 DGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSV 199
Query: 193 PV-ATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNK-GLLCGIQKLGGGSLS 250
PV T V H+ + D T EE S + IS N+ G +CG+ K G L
Sbjct: 200 PVIVTLTKVGTHY------IVDATAEEESQM---SSAVSISVNRTGHICGLTKRSGSGLD 250
Query: 251 TENNEEAIRLAEQHTIAVEKRLSKIDT 277
+ I +A+ T E +SK+D+
Sbjct: 251 PSVILDMISVAKHVT---ETLMSKLDS 274
>At3g07750.1 68416.m00939 3' exoribonuclease family domain
1-containing protein similar to SP|Q15024 Exosome
complex exonuclease RRP42 (EC 3.1.13.-) (Ribosomal RNA
processing protein 42) {Homo sapiens}; contains Pfam
profile PF01138: 3' exoribonuclease family, domain 1
Length = 286
Score = 77.0 bits (181), Expect = 5e-14
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 24/267 (8%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKAEEPDLGFLITN 82
R DGR +R I + I A+ SA V+ G T V+ +K E+ P + +PD G +
Sbjct: 20 RTDGRKRLTYRPIYVETGVIPQANGSARVRIGGTDVIASVKAEIGRPSSLQPDKGKVAVF 79
Query: 83 VELPALCSSKYRPGPPSDYAQVINNIVSEIIKNSKC-----IDLKDLCIVPDKLAWVVYC 137
++ + + + + + + K I+L L I K+ W +Y
Sbjct: 80 IDCSPTAEPTFGGRGGEELSSELALALQRCLLGGKSGAGAGINLSSLLIKEGKVCWDLYI 139
Query: 138 DMVCIDHDGSLVDACIIALIASFKTLLLPSVNY-----DTETEEIKVETNERINLKIHGL 192
D + I DG+L+DA A+ A+ +P VN D E EI + E + +
Sbjct: 140 DGLVISSDGNLLDALGAAIKAALTNTAIPKVNVSAEVADDEQPEIDISDEEYLQFDTSSV 199
Query: 193 PV-ATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNK-GLLCGIQKLGGGSLS 250
PV T V H+ + D T EE S + IS N+ G +CG+ K G L
Sbjct: 200 PVIVTLTKVGTHY------IVDATAEEESQM---SSAVSISVNRTGHICGLTKRSGSGLD 250
Query: 251 TENNEEAIRLAEQHTIAVEKRLSKIDT 277
+ I +A+ T E +SK+D+
Sbjct: 251 PSVILDMISVAKHVT---ETLMSKLDS 274
>At3g61620.1 68416.m06906 exonuclease RRP41 (RRP41) identical to
exonuclease RRP41 [Arabidopsis thaliana] GI:6164938
Length = 241
Score = 41.5 bits (93), Expect = 0.002
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 23 RLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGI 62
RLDGR F+E R I V + AD SAV + GNT V+ +
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAV 49
>At4g27490.1 68417.m03949 3' exoribonuclease family domain
1-containing protein contains Pfam PF01138: 3'
exoribonuclease family, domain 1
Length = 256
Score = 33.5 bits (73), Expect = 0.57
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 22 TRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKLELAVPKA-EEPDLGFLI 80
+R DGR F + R L ++ +A SA + GNT V+ + KA D+G L
Sbjct: 33 SRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLN 92
Query: 81 TNVELPALCSSKYRPGPP-SDYAQVINNIVSEII 113
NV S G +Y+ +++ + +I
Sbjct: 93 CNVSYTNFASPTLGQGTDHKEYSSMLHKALEGVI 126
>At3g55640.1 68416.m06182 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 332
Score = 31.5 bits (68), Expect = 2.3
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 190 HGLPVAT-SFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGI 241
H LP ++ +F YEH++ + ++T N++E G SNL + + G L GI
Sbjct: 105 HRLPYSSVNFYAYEHYKKFMYMVTGMENHKE----GISSNLFVHFVAGGLAGI 153
>At5g41480.1 68418.m05037 dihydrofolate
synthetase/folylpolyglutamate synthetase (DHFS/FPGS1)
nearly identical to GI:17976703; identical to cDNA
dihydrofolate synthetase/folylpolyglutamate synthetase
(dhfs/fpgs1 gene) GI:17976702
Length = 530
Score = 31.1 bits (67), Expect = 3.0
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 709 ANTGTELQSYAPELVHHFQTHGSPIMIGGGVLAHTILGIEYNSITNETRYLILDPHYTGA 768
A G L+S A E HG P+++GG L H I GI + + + +IL + +
Sbjct: 229 AALGGSLESIA-EAKSGIIKHGRPVVLGGPFLPH-IEGILRSKAASVSSSVILASNIGSS 286
Query: 769 EDITTVINKGWCG 781
I +INK G
Sbjct: 287 SSIKGIINKNGIG 299
>At5g14580.1 68418.m01710 polyribonucleotide nucleotidyltransferase,
putative similar to Swiss-Prot:P05055 polyribonucleotide
nucleotidyltransferase (EC 2.7.7.8) (Polynucleotide
phosphorylase) (PNPase) [Escherichia coli]
Length = 991
Score = 30.7 bits (66), Expect = 4.0
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 18 ISIKTRLDGRNFDEHRNIKLNVNSIKTADASAVVKCGNTTVVCGIKL 64
IS R+DGR+ DE R I + + SA+ G+T V+C + L
Sbjct: 359 ISDGFRVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTL 405
>At1g77855.1 68414.m09073 hypothetical protein
Length = 317
Score = 30.7 bits (66), Expect = 4.0
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 183 ERINLKIHGLPVATSFAVYEHFQSQIILLTDPTNYEEEMCGGNGSNLIISYNKGLLCGIQ 242
+R+ ++ + V +YE+ +S+ + E CGG G + KGL I+
Sbjct: 219 QRVAAEMERIGVRKGMMMYEYRRSKTAMEELKVELERRCCGGGGEEEAV--EKGLRERIE 276
Query: 243 KLGGGSLSTENNEEAI 258
L G S N E+I
Sbjct: 277 NLKGSVGSLRNGTESI 292
>At1g51870.1 68414.m05847 protein kinase family protein contains
Serine/Threonine protein kinases active-site signature,
PROSITE:PS00108
Length = 837
Score = 30.3 bits (65), Expect = 5.3
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 658 VEVPTHKEIQQCLVKIGDKQSTFIGSKQWIGSTEVMFCLET-LLGVQSRIIFANTGTELQ 716
+ V T K +Q CLVK G K + FI S + ++ E+ + +Q+R+ F + T +
Sbjct: 149 IHVLTQKRLQVCLVKTG-KTTPFISSLELRPLINNIYIAESGSMVLQNRVYFPSDSTSIV 207
Query: 717 SYAPEL 722
Y ++
Sbjct: 208 RYDEDI 213
>At2g29370.1 68415.m03568 tropinone reductase, putative / tropine
dehydrogenase, putative similar to SP|P50162 Tropinone
reductase-I (EC 1.1.1.206) (TR-I) (Tropine
dehydrogenase) {Datura stramonium}
Length = 268
Score = 29.5 bits (63), Expect = 9.2
Identities = 21/77 (27%), Positives = 32/77 (41%)
Query: 437 VYLFGVASDVGLTGTSTEATVGELVDSMSPEQPSKKKKYNINNAEILPVSLILKVTKDIL 496
V + VA V L TS ++ ++ + NI + P + TKD L
Sbjct: 151 VLMSSVAGVVNLGNTSIYGATKGAMNQLARNLACEWASDNIRANSVCPWFITTPSTKDFL 210
Query: 497 SDKLVKTAVKMMTTQRK 513
DK VK V+ +T R+
Sbjct: 211 GDKDVKEKVESVTPLRR 227
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 29.5 bits (63), Expect = 9.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 365 MKAHFIVHDKFEETKYEVFSPEELWKQFLHVRLNTVLPL 403
+K I DK + TKY + S E+LWK + V + +PL
Sbjct: 211 LKLMTIKRDKDQFTKYTITSLEKLWKPKIFVEPDLGIPL 249
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,091,335
Number of Sequences: 28952
Number of extensions: 823212
Number of successful extensions: 1930
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 18
length of query: 805
length of database: 12,070,560
effective HSP length: 87
effective length of query: 718
effective length of database: 9,551,736
effective search space: 6858146448
effective search space used: 6858146448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -